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[186546_at]

Description H04M03.10 /REP_DB=WormBase Gene ID /WP=CE20929 /TR=Q9TYR3 /GB=AAD12798.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 18      6grp_cgc > 09      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 4
(-2.8)
A 		6.8
(-2.4)
A 		2.1
(-3)
A 		52.7
(3)
A 		51
B 38.3
(2.1)
A 		38.3
(2.1)
A 		39.6
(3)
A 		30.6
(-3)
A 		9
C 7.9
(-3)
A 		37.5
(-1)
A 		13
(-2.7)
A 		95.6
(3)
A 		88
avr 16.7
(-3) 		27.5
(-1.5) 		18.2
(-2.8) 		59.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 79.5
(3)
A 		2.1
(-3)
A 		5
(-2.8)
A 		19.8
(-1.6)
A 		36.1
(-0.4)
A 		10.2
(-2.4)
A 		77
B 13.7
(-0.8)
A 		5
(-2.6)
A 		3.1
(-3)
A 		3.9
(-2.8)
A 		7.3
(-2.1)
A 		32.6
(3)
A 		30
C 4.8
(-2.9)
A 		54.5
(3)
A 		4
(-3)
A 		41.3
(1.4)
A 		28.3
(-0.1)
A 		24.5
(-0.6)
A 		51
avr 32.7
(3) 		20.5
(0.4) 		4
(-3) 		21.7
(0.7) 		23.9
(1.2) 		22.4
(0.8) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.4
(-2.3)
A 		1.5
(-2.2)
A 		0.6
(-3)
A 		7.7
(3)
A 		7
B 12.2
(3)
A 		9.4
(0.1)
A 		9.2
(-0.2)
A 		6.5
(-3)
A 		6
C 2.6
(-3)
A 		10.8
(0.6)
A 		4.5
(-2.2)
A 		16.1
(3)
A 		14
avr 5.4
(-2.3) 		7.2
(-0.3) 		4.8
(-3) 		10.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 14.7
(3)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		5
(-1.2)
A 		10.9
(1.4)
A 		2.5
(-2.2)
A 		14
B 4.8
(-0.9)
A 		1.7
(-2.5)
A 		0.7
(-3)
A 		1
(-2.8)
A 		2.9
(-1.9)
A 		12.2
(3)
A 		12
C 1.8
(-2.7)
A 		16.6
(3)
A 		1
(-3)
A 		8.3
(-0.2)
A 		9.2
(0.2)
A 		8.2
(-0.2)
A 		16
avr 7.1
(2.5) 		6.3
(1.8) 		0.9
(-3) 		4.8
(0.4) 		7.7
(3) 		7.6
(2.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10626
Sequence Type Exemplar sequence
Representative Public ID H04M03.10 NCBI
Target Description H04M03.10 /REP_DB=WormBase Gene ID /WP=CE20929 /TR=Q9TYR3 /GB=AAD12798.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H04M03.10 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:5880707:5882320:-1 gene:H04M03.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034810 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5880597-5881823(-) 100.0 100.0
Public Domain and Genome References
Ensembl H04M03.10
Sequence
Target Sequence 
>C. ELEGANS:186546_AT
gtactattactaggcttattcacaatttgaaacagtggaaaattttcatgctatactggt
tttcgtcagttctatttagtataatttgtttctcaaatcctgaaattggatttgattccc
ctgaacgaatgattttagttatggatccagcttatatcagtaatacgacaaaaattttat
ttgtttttgtaatggtatcatgcatgatttgtctagtattttatggacttattgtgaaat
ttattagaggaaatacacaatccgtttccaaaactttgcaaagagaaatccgactggctt
tccaagtatttctatcacttgcagctcaatcaattttactggtttatttatttttctcat
atatttttgctgaaactggcaacactgcccagattgtgaacacaagaagatttttcccac
ttgcctatggaactatttcttttatcggcccatttacaatactaatttttaataaagacg
tcctgaacaatgtaaaacttctgctacttgccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTATTACTAGGCTTATTCACAA 591 459 155 Antisense
TTTTCATGCTATACTGGTTTTCGTC 166 677 197 Antisense
GGTTTTCGTCAGTTCTATTTAGTAT 158 495 212 Antisense
ATTGGATTTGATTCCCCTGAACGAA 79 3 259 Antisense
GAGAAATCCGACTGGCTTTCCAAGT 431 391 437 Antisense
GACTGGCTTTCCAAGTATTTCTATC 113 377 446 Antisense
GTATTTCTATCACTTGCAGCTCAAT 458 453 460 Antisense
GCTGAAACTGGCAACACTGCCCAGA 69 297 523 Antisense
GCAACACTGCCCAGATTGTGAACAC 591 319 533 Antisense
TATTTCTTTTATCGGCCCATTTACA 405 661 588 Antisense
GTAAAACTTCTGCTACTTGCCAAAA 525 461 646 Antisense
Sequence Source Affymetrix Proprietary Database