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[186545_s_at]

Description Y55F3AM.9 /REP_DB=WormBase Gene ID /WP=CE25491 /TR=Q9N370 /GB=AAF60801.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 72      6grp_total > 75      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 417.7
(-1.3)
P 		367.3
(-3)
P 		488.9
(1.2)
P 		542.6
(3)
P 		175
B 376.7
(-1.7)
P 		354.1
(-3)
P 		440.3
(1.9)
P 		458.6
(3)
P 		105
C 407.4
(-1.2)
P 		358.6
(-2.6)
P 		345.8
(-3)
P 		546.9
(3)
P 		201
avr 400.6
(-1.4) 		360
(-3) 		425
(-0.5) 		516
(3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 457.8
(-0.5)
P 		385
(-3)
P 		446.6
(-0.9)
P 		558.6
(3)
P 		454.3
(-0.6)
P 		547.2
(2.6)
P 		174
B 360
(-3)
P 		402.6
(-1.3)
P 		415.4
(-0.8)
P 		498.7
(2.5)
P 		435.6
(0)
P 		510.6
(3)
P 		151
C 351.7
(-3)
P 		352
(-3)
P 		556.8
(3)
P 		495.1
(1.2)
P 		376.5
(-2.3)
P 		470.6
(0.5)
P 		205
avr 389.8
(-2.6) 		379.9
(-3) 		472.9
(1.1) 		517.5
(3) 		422.1
(-1.2) 		509.5
(2.7) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 152.1
(3)
P 		79.7
(-3)
P 		127.8
(1)
P 		79.4
(-3)
P 		73
B 120.1
(3)
P 		87.5
(-3)
P 		102
(-0.3)
P 		97.7
(-1.1)
P 		33
C 134.9
(3)
P 		103.1
(-1.5)
P 		120.5
(1)
P 		92.2
(-3)
P 		43
avr 135.7
(3) 		90.1
(-3) 		116.8
(0.5) 		89.8
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 84.4
(-3)
P 		136.9
(2.5)
P 		97.3
(-1.6)
P 		141.7
(3)
P 		137.1
(2.5)
P 		133.2
(2.1)
P 		57
B 125.3
(-1.4)
P 		134
(-0.8)
P 		100.9
(-3)
P 		132.1
(-0.9)
P 		177
(2.1)
P 		190.4
(3)
P 		90
C 130.4
(0.2)
P 		107.4
(-2.2)
P 		141.7
(1.4)
P 		99.6
(-3)
P 		121.8
(-0.7)
P 		157.5
(3)
P 		58
avr 113.4
(-3) 		126.1
(-1.4) 		113.3
(-3) 		124.5
(-1.6) 		145.3
(1.1) 		160.4
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186545_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10632
Sequence Type Exemplar sequence
Representative Public ID Y55F3AM.9 NCBI
Target Description Y55F3AM.9 /REP_DB=WormBase Gene ID /WP=CE25491 /TR=Q9N370 /GB=AAF60801.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067622 NCBI Caenorhabditis elegans Y55F3AM.9 (Y55F3AM.9) mRNA, complete cds. 11/11 None
Y55F3AM.9 ENSEMBL cdna:known chromosome:CEL140:IV:1006098:1009717:-1 gene:Y55F3AM.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030048 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030063 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1006326-1009667(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3AM.9
Entrez Gene 176920 Entrez gene
SwissProt Q9N370 EMBL-EBI
WormBase CE25491 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.12932.1.A1_AT similar to Y55F3AM.9 cfa
CANINE_2:CFA.12932.1.A1_S_AT similar to Y55F3AM.9 cfa
CANINE_2:CFAAFFX.25359.1.S1_AT similar to Y55F3AM.9 cfa
MG-U74BV2:107874_AT RIKEN cDNA B230380D07 gene mm
MOE430B:1436842_AT RIKEN cDNA B230380D07 gene mm
MOUSE430_2:1436842_AT RIKEN cDNA B230380D07 gene mm
MOE430B:1436841_AT RIKEN cDNA B230380D07 gene mm
MOUSE430_2:1436841_AT RIKEN cDNA B230380D07 gene mm
MG-U74CV2:132010_AT MKIAA1164 protein mm
MG-U74CV2:169298_I_AT MKIAA1164 protein mm
MU19KSUBB:TC29587_AT MKIAA1164 protein mm
MU19KSUBB:TC31445_AT MKIAA1164 protein mm
MU19KSUBC:TC41163_AT MKIAA1164 protein mm
RG-U34A:RC_AI639262_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RG-U34B:RC_AI045965_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAE230A:1384609_A_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAT230_2:1384609_A_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAE230A:1381356_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAT230_2:1381356_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAE230A:1384610_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAT230_2:1384610_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAE230A:1393505_X_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAT230_2:1393505_X_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAE230B:1397774_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RAT230_2:1397774_AT similar to RIKEN cDNA B230380D07 (predicted) rn
RG-U34B:RC_AI044752_AT Similar to RIKEN cDNA B230380D07 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60801 Hypothetical protein Y55F3AM.9 [Caenorhabditis elegans] ref|NP_500023.1| Y55F3AM.9 [Caenorhabditis elegans] 0.0
blast CAE68281 Hypothetical protein CBG13965 [Caenorhabditis briggsae] 2.0E-79
blast XP_791130 PREDICTED: similar to putative prenylated protein of eukaryotic origin (42.0 kD) (4B760) [Strongylocentrotus purpuratus] 2.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR007518 EMBL-EBI Protein of unknown function DUF544 1.3E-65
Sequence
Target Sequence 
>C. ELEGANS:186545_S_AT
tcatgtttggctaccagatccgcagtttacagttctctacgacctaattcgcaatctgaa
ctacaatgagcttgtggagaaaatgtgcggcgatcagagcacggaaactgagcttttgag
gactttttacgacgaaagtatctcacaaatcacatttcacggcttagcatcacttatgga
acggatgaaagacggagaactcgctgttgtattccataataatcatttttcgacgatttt
aaagagaagagacgaaatcttcaaattggtgtcggatgagggtctttgcgatgagccaaa
tattgtttgggagacttttagcagtgtcgatggagactgcatttttgttaatggagattt
tggaaatttcaaaccaataaccccaccaacaactcacccatcacctgaatcattcgaaaa
acttcaaatttccgataattctccaattgaacaaggaattgaagctgtggagcacacttc
tgctcatcattctgctccagtgagcccccagcatcgggctccagctccaccggctccaca
gactgcaagagctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGTTTGGCTACCAGATCCGCAG 235 623 537 Antisense
AGATCCGCAGTTTACAGTTCTCTAC 105 67 552 Antisense
GTTCTCTACGACCTAATTCGCAATC 293 443 568 Antisense
GAGCTTTTGAGGACTTTTTACGACG 391 387 646 Antisense
AAATCACATTTCACGGCTTAGCATC 477 117 683 Antisense
GGAGAACTCGCTGTTGTATTCCATA 151 519 730 Antisense
GGATGAGGGTCTTTGCGATGAGCCA 54 515 810 Antisense
TCACCCATCACCTGAATCATTCGAA 306 627 930 Antisense
GCTGTGGAGCACACTTCTGCTCATC 522 295 1000 Antisense
CTCATCATTCTGCTCCAGTGAGCCC 383 229 1019 Antisense
GGCTCCACAGACTGCAAGAGCTCCG 88 541 1068 Antisense
Sequence Source Affymetrix Proprietary Database