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[186544_s_at]

Description C35D10.10 /REP_DB=WormBase Gene ID /WP=CE01191 /TR=Q18484 /GB=AAA62566.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 56      6grp_total > 62      4grp_total > 49      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 986
1 2 3 4 range
A 1555.8
(-3)
P 		2431.8
(3)
P 		2112.3
(0.8)
P 		1712.4
(-1.9)
P 		876
B 1754.3
(-3)
P 		2168.7
(0.2)
P 		2541.7
(3)
P 		1849.8
(-2.3)
P 		787
C 1767.9
(-2.9)
P 		2108.1
(1.8)
P 		2194.5
(3)
P 		1758.5
(-3)
P 		436
avr 1692.7
(-3) 		2236.2
(2.5) 		2282.8
(3) 		1773.6
(-2.2) 		590

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1072
1 2 3 4 5 6 range
A 1725.5
(-1.5)
P 		1737.8
(-1.4)
P 		2301.1
(3)
P 		1992.8
(0.6)
P 		1528.5
(-3)
P 		1612.1
(-2.4)
P 		773
B 1491.3
(-3)
P 		2076.2
(0.5)
P 		2482.3
(3)
P 		1901.4
(-0.5)
P 		1648.6
(-2)
P 		1717.2
(-1.6)
P 		991
C 1410.7
(-3)
P 		1929
(0.2)
P 		1797.3
(-0.6)
P 		2389.6
(3)
P 		1477.4
(-2.6)
P 		2043.7
(0.9)
P 		979
avr 1542.5
(-3) 		1914.3
(0.4) 		2193.6
(3) 		2094.6
(2.1) 		1551.5
(-2.9) 		1791
(-0.7) 		651
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 514
1 2 3 4 range
A 566.5
(3)
P 		527.9
(2.3)
P 		552.2
(2.7)
P 		250.7
(-3)
P 		316
B 559.4
(2.1)
P 		535.6
(1.4)
P 		589
(3)
P 		394.2
(-3)
P 		195
C 585.2
(0.7)
P 		606.1
(1)
P 		764.9
(3)
P 		296.5
(-3)
P 		468
avr 570.4
(1.8) 		556.5
(1.5) 		635.4
(3) 		313.8
(-3) 		322

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 318.1
(-3)
P 		618
(3)
P 		501.1
(0.7)
P 		505.4
(0.7)
P 		461.2
(-0.1)
P 		392.5
(-1.5)
P 		300
B 518.9
(-2.5)
P 		691.1
(3)
P 		602.8
(0.2)
P 		503.6
(-3)
P 		669.8
(2.3)
P 		640.3
(1.4)
P 		188
C 522.9
(-1.3)
P 		588.6
(0.5)
P 		457.4
(-3)
P 		480.5
(-2.4)
P 		478.1
(-2.5)
P 		684.1
(3)
P 		227
avr 453.3
(-3) 		632.6
(3) 		520.4
(-0.8) 		496.5
(-1.6) 		536.4
(-0.2) 		572.3
(1) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186544_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6963
Sequence Type Exemplar sequence
Representative Public ID C35D10.10 NCBI
Target Description C35D10.10 /REP_DB=WormBase Gene ID /WP=CE01191 /TR=Q18484 /GB=AAA62566.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065611(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065611 NCBI Caenorhabditis elegans C35D10.10 (C35D10.10) mRNA, complete cds. 11/11 None
SNAP00000029545 ENSEMBL cdna:SNAP chromosome:CEL140:III:4860804:4861747:-1 11/11 None
GENEFINDER00000029566 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4860804:4862027:-1 11/11 None
C35D10.10 ENSEMBL cdna:known chromosome:CEL140:III:4860642:4861755:-1 gene:C35D10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4860803-4861747(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35D10.10
Entrez Gene 175646 Entrez gene
SwissProt Q18484 EMBL-EBI
WormBase CE01191 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.1263.1.S1_AT similar to thioredoxin-related transmembrane protein 2 cfa
CANINE_2:CFAAFFX.12502.1.S1_S_AT similar to thioredoxin-related transmembrane protein 2 cfa
DROSOPHILA_2:1630991_AT dm
DROSGENOME1:153447_AT dm
CHICKEN:GGA.19356.1.S1_AT similar to thioredoxin-related transmembrane protein 2 gga
HG-U133A:201175_AT thioredoxin domain containing 14 hs
HG-U133A_2:201175_AT thioredoxin domain containing 14 hs
HG-U133_PLUS_2:201175_AT thioredoxin domain containing 14 hs
U133_X3P:G7705725_3P_AT thioredoxin domain containing 14 hs
HG-U95D:79095_I_AT Thioredoxin domain containing 14 hs
RAE230A:1371796_AT Thioredoxin-related transmembrane protein 2 rn
RAT230_2:1371796_AT Thioredoxin-related transmembrane protein 2 rn
RG-U34C:RC_AI104273_AT Thioredoxin-related transmembrane protein 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498012 C35D10.10 [Caenorhabditis elegans] gb|AAA62566.1| Hypothetical protein C35D10.10 [Caenorhabditis elegans] 1.0E-145
blast CAE71106 Hypothetical protein CBG17959 [Caenorhabditis briggsae] 1.0E-137
blast XP_394865 PREDICTED: similar to ENSANGP00000011893 [Apis mellifera] 6.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498012.1 3 13-30,75-94,99-121
C35D10.10 3 13-30,75-94,99-121
SNAP00000029545 3 13-30,75-94,99-121
GENEFINDER00000029566 2 128-145,149-171
Sequence
Target Sequence 
>C. ELEGANS:186544_S_AT
cggcatgttccttttcattcgtgccgatattctgcctggaatcatctatattttagcctg
cttaatcgttactgttcttttccctgaacccgtgtacaacggtccagagcaagtgacata
tttccaaggtgaacagcttttcgaagaacttaccagaaatcgaaataccatctgggttat
tcaattcttcacaacatggagcccagaatgcagacatacttcacccgtttttgcggaatt
gagtcaaaagttcacacttccaaacatgaagtttgggaaattggatattggaagatgggc
aaaagaaggcgagcggttccgtgtgaatgctcatccaatgtcacgacagttaccaactat
ttgtgtattcaaggacgcaaaggaaatcgctcgtcgtccactagtcaacgatagtcgtcg
tgctgttccatttgtgttcagtgaagagaactgtgttcttgcattcgatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGCATGTTCCTTTTCATTCGTGCC 467 241 279 Antisense
TTCATTCGTGCCGATATTCTGCCTG 646 689 292 Antisense
GAACCCGTGTACAACGGTCCAGAGC 167 347 364 Antisense
CAATTCTTCACAACATGGAGCCCAG 529 179 460 Antisense
AGAATGCAGACATACTTCACCCGTT 463 75 483 Antisense
AGGCGAGCGGTTCCGTGTGAATGCT 90 55 585 Antisense
GAATGCTCATCCAATGTCACGACAG 462 329 603 Antisense
ACGCAAAGGAAATCGCTCGTCGTCC 70 91 653 Antisense
CTCGTCGTCCACTAGTCAACGATAG 180 233 668 Antisense
GTCGTGCTGTTCCATTTGTGTTCAG 159 473 695 Antisense
AACTGTGTTCTTGCATTCGATCTTC 503 143 727 Antisense
Sequence Source Affymetrix Proprietary Database