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[186543_s_at] --- /// G-protein coupled receptor, srh family

Description Y102A5C.31 /REP_DB=WormBase Gene ID /WP=CE20402 /TR=Q9XX66 /GB=CAA20969.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 06      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 4.3
(-3)
A 		8.4
(0.8)
A 		6.1
(-1.3)
A 		10.7
(3)
A 		6
B 46.8
(3)
A 		8.4
(-2.6)
A 		5.3
(-3)
A 		7.1
(-2.7)
A 		42
C 5.8
(-3)
A 		8.5
(-2.7)
A 		21.3
(-1.1)
A 		56
(3)
A 		50
avr 19
(0.9) 		8.4
(-3) 		10.9
(-2.1) 		24.6
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 8.6
(-2.6)
A 		5.7
(-3)
A 		51.5
(3)
A 		6.7
(-2.9)
A 		17.8
(-1.4)
A 		6.3
(-2.9)
A 		46
B 10.9
(-1.9)
A 		12.1
(-1.7)
A 		32.3
(1.7)
A 		40
(3)
A 		6
(-2.7)
A 		4.4
(-3)
A 		36
C 10.8
(-2.2)
A 		33.8
(3)
A 		8.2
(-2.8)
A 		7.2
(-3)
A 		11.2
(-2.1)
A 		19.8
(-0.2)
A 		27
avr 10.1
(-3) 		17.2
(-0.9) 		30.7
(3) 		18
(-0.7) 		11.7
(-2.5) 		10.2
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.6
(-3)
A 		1.8
(3)
A 		1.6
(-3)
A 		1.6
(-3)
A 		0
B 14.9
(3)
A 		2.1
(-2.6)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		14
C 1.9
(-3)
A 		2.4
(-2.6)
A 		7.4
(1.4)
A 		9.4
(3)
A 		8
avr 6.1
(3) 		2.1
(-3) 		3.4
(-1.1) 		4.2
(0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		2
(-2.7)
A 		11.2
(3)
A 		1.7
(-2.9)
A 		5.4
(-0.6)
A 		1.5
(-3)
A 		10
B 3.8
(-1.5)
A 		4
(-1.4)
A 		7.9
(1.2)
A 		10.6
(3)
A 		2.4
(-2.5)
A 		1.6
(-3)
A 		9
C 4
(-1.2)
A 		10.3
(3)
A 		2.1
(-2.5)
A 		1.4
(-3)
A 		3.6
(-1.5)
A 		6.6
(0.5)
A 		9
avr 3.1
(-3) 		5.4
(0.5) 		7.1
(3) 		4.6
(-0.8) 		3.8
(-2) 		3.2
(-2.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186543_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14161
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.31 NCBI
Target Description Y102A5C.31 /REP_DB=WormBase Gene ID /WP=CE20402 /TR=Q9XX66 /GB=CAA20969.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075003(11), NM_074901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075003 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-132) (srh-132) mRNA, complete cds. 11/11 A 
NM_074901 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-131) (srh-131) mRNA, complete cds. 11/11 A 
SNAP00000003169 ENSEMBL cdna:SNAP chromosome:CEL140:V:17008199:17009331:1 11/11 None
GENEFINDER00000003178 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17008199:17009331:1 11/11 None
SNAP00000030293 ENSEMBL cdna:SNAP chromosome:CEL140:V:17412964:17414282:1 11/11 None
GENEFINDER00000030303 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17412964:17414282:1 11/11 None
Y102A5C.31 ENSEMBL cdna:known chromosome:CEL140:V:17008067:17009331:1 gene:Y102A5C.31 11/11 A 
T27C5.5 ENSEMBL cdna:known chromosome:CEL140:V:17412832:17414282:1 gene:T27C5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17008066-17009331(+) 100.0 100.0
Public Domain and Genome References
Gene Title
G-protein coupled receptor, srh family
Gene Symbol srh-132
srh-131
Ensembl Y102A5C.31
T27C5.5
Entrez Gene 188984 Entrez gene
190853 Entrez gene
SwissProt O45849 EMBL-EBI
Q9XX66 EMBL-EBI
WormBase CE16499 Wormbase
CE20402 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04866 Hypothetical protein T27C5.5 [Caenorhabditis elegans] ref|NP_507404.1| Serpentine Receptor, class H family member (srh-132) [Caenorhabditis elegans] 0.0
blast CAA20969 Hypothetical protein Y102A5C.31 [Caenorhabditis elegans] ref|NP_507302.1| Serpentine Receptor, class H family member (srh-131) [Caenorhabditis elegans] 0.0
blast CAA20969 Hypothetical protein Y102A5C.31 [Caenorhabditis elegans] ref|NP_507302.1| Serpentine Receptor, class H family member (srh-131) [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507404.1 7 17-39,52-74,96-118,138-157,194-216,237-259,274-296
NP_507302.1 6 54-76,96-118,138-157,194-216,237-259,274-296
Y102A5C.31 6 54-76,96-118,138-157,194-216,237-259,274-296
T27C5.5 7 17-39,52-74,96-118,138-157,194-216,237-259,274-296
SNAP00000003169 6 13-35,50-72,92-114,150-172,193-215,230-252
GENEFINDER00000003178 6 13-35,50-72,92-114,150-172,193-215,230-252
SNAP00000030293 6 9-31,51-73,94-113,150-172,193-215,230-252
GENEFINDER00000030303 6 9-31,51-73,94-113,150-172,193-215,230-252
Sequence
Target Sequence 
>C. ELEGANS:186543_S_AT
ataaccagccagatcaaatggaaggaaggaaatttgtgaaaaggacccttccctgtgtac
ccgaatcaataattgatgaccccgactttcacctctggcttgaagaaccaatgctctatg
caattcattatggtctcaccgcactagttatctcgttggaagtgatctactatttcgtgc
atactgccttattcctctcgagtacaaaagcaaagtcacagaaaacgcacaaactgcagg
tgcaatttttcatcgcgttgacgattcaaatagcgattccattatttattgtgatatttc
caattgcgtatcttattacggcatttataacattgcatttcgatcagatgtacaacaaca
ttgctttgaactttattgcaatgcacggcgtggcctccagttcagtaatgctgatagttc
ataaaccataccgagacgcagttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAACCAGCCAGATCAAATGGAAGG 541 23 482 Antisense
TGTGAAAAGGACCCTTCCCTGTGTA 109 545 516 Antisense
CTTCCCTGTGTACCCGAATCAATAA 404 219 529 Antisense
CCCTGTGTACCCGAATCAATAATTG 621 259 532 Antisense
AATAATTGATGACCCCGACTTTCAC 303 171 549 Antisense
ATCTACTATTTCGTGCATACTGCCT 14 33 646 Antisense
ACTATTTCGTGCATACTGCCTTATT 647 101 650 Antisense
GTGCAATTTTTCATCGCGTTGACGA 124 481 721 Antisense
CATCGCGTTGACGATTCAAATAGCG 335 211 732 Antisense
ATTGCATTTCGATCAGATGTACAAC 539 5 813 Antisense
CATAAACCATACCGAGACGCAGTTG 3 211 901 Antisense
Sequence Source Affymetrix Proprietary Database