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[186542_at] G-protein coupled receptor, srh family

Description Y102A5C.31 /REP_DB=WormBase Gene ID /WP=CE20402 /TR=Q9XX66 /GB=CAA20969.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 30.4
(0.6)
A 		5.7
(-3)
A 		30.8
(0.6)
A 		47.1
(3)
A 		41
B 12.6
(-3)
A 		30.9
(-0.8)
A 		37.2
(-0.1)
A 		63.2
(3)
A 		51
C 28.1
(0.5)
A 		6.8
(-3)
A 		43.2
(3)
A 		11.8
(-2.2)
A 		36
avr 23.7
(-0.9) 		14.5
(-3) 		37.1
(2.2) 		40.7
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 58.4
(-0.1)
A 		17.3
(-2.8)
A 		13.8
(-3)
A 		37.7
(-1.4)
A 		105.4
(3)
A 		53.8
(-0.4)
A 		92
B 29.2
(-1.7)
A 		112.3
(3)
A 		43.6
(-0.8)
A 		33.4
(-1.4)
A 		22.6
(-2)
A 		5.2
(-3)
A 		107
C 9.8
(-2.7)
A 		38.6
(0.7)
A 		13.7
(-2.2)
A 		58.5
(3)
A 		6.8
(-3)
A 		30
(-0.3)
A 		52
avr 32.5
(-1.4) 		56.1
(3) 		23.7
(-3) 		43.2
(0.6) 		44.9
(0.9) 		29.7
(-1.9) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.1
(3)
A 		1.2
(-3)
A 		8.1
(1.2)
A 		6.9
(0.5)
A 		10
B 4
(-3)
A 		7.6
(-0.7)
A 		8.6
(-0.1)
A 		13.5
(3)
A 		10
C 9.3
(0.4)
A 		2
(-3)
A 		15
(3)
A 		2
(-3)
A 		13
avr 8.1
(0.9) 		3.6
(-3) 		10.6
(3) 		7.5
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 10.8
(-1.4)
A 		6.1
(-2.4)
A 		3
(-3)
A 		9.6
(-1.6)
A 		31.8
(3)
A 		13.1
(-0.9)
A 		29
B 10.2
(-1.6)
A 		37.4
(3)
A 		10.6
(-1.5)
A 		8.8
(-1.8)
A 		9.2
(-1.8)
A 		1.9
(-3)
A 		36
C 3.6
(-2.1)
A 		11.8
(3)
A 		3.5
(-2.2)
A 		11.8
(3)
A 		2.2
(-3)
A 		10
(1.9)
A 		10
avr 8.2
(-1.8) 		18.4
(3) 		5.7
(-3) 		10.1
(-0.9) 		14.4
(1.1) 		8.3
(-1.8) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14161
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.31 NCBI
Target Description Y102A5C.31 /REP_DB=WormBase Gene ID /WP=CE20402 /TR=Q9XX66 /GB=CAA20969.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074901(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074901 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-131) (srh-131) mRNA, complete cds. 11/11 A 
SNAP00000003169 ENSEMBL cdna:SNAP chromosome:CEL140:V:17008199:17009331:1 11/11 None
GENEFINDER00000003178 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17008199:17009331:1 11/11 None
Y102A5C.31 ENSEMBL cdna:known chromosome:CEL140:V:17008067:17009331:1 gene:Y102A5C.31 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17008066-17009331(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-131
Ensembl Y102A5C.31
Entrez Gene 190853 Entrez gene
SwissProt Q9XX66 EMBL-EBI
WormBase CE20402 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20969 Hypothetical protein Y102A5C.31 [Caenorhabditis elegans] ref|NP_507302.1| Serpentine Receptor, class H family member (srh-131) [Caenorhabditis elegans] 0.0
blast CAB04866 Hypothetical protein T27C5.5 [Caenorhabditis elegans] ref|NP_507404.1| Serpentine Receptor, class H family member (srh-132) [Caenorhabditis elegans] 0.0
blast CAA20969 Hypothetical protein Y102A5C.31 [Caenorhabditis elegans] ref|NP_507302.1| Serpentine Receptor, class H family member (srh-131) [Caenorhabditis elegans] 1.0E-174
blast CAB04866 Hypothetical protein T27C5.5 [Caenorhabditis elegans] ref|NP_507404.1| Serpentine Receptor, class H family member (srh-132) [Caenorhabditis elegans] 1.0E-157
blast CAC14413 Hypothetical protein Y59A8B.3 [Caenorhabditis elegans] ref|NP_507522.1| Serpentine Receptor, class H family member (srh-133) [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507302.1 6 54-76,96-118,138-157,194-216,237-259,274-296
Y102A5C.31 6 54-76,96-118,138-157,194-216,237-259,274-296
SNAP00000003169 6 13-35,50-72,92-114,150-172,193-215,230-252
GENEFINDER00000003178 6 13-35,50-72,92-114,150-172,193-215,230-252
Sequence
Target Sequence 
>C. ELEGANS:186542_AT
ctatgctttaatgttcacgcttcccttgttctataaccagccagatcaaatggaaggaag
gaaatttgtgaaaaggacccttccctgtgtacccgaatcaataattgatgaccccgactt
tcacctctggcttgaagaaccaatgctctatgcaattcattatggtctcaccgcactagt
tatctcgttggaagtgatctactatttcgtgcatactgccttattcctctcgagtacaaa
agcaaagtcacagaaaacgcacaaactgcaggtgcaatttttcatcgcgttgacgattca
aatagcgattccattatttattgtgatatttccaattgcgtatcttattacggcatttat
aacattgcatttcgatcagatgtacaacaacattgctttgaactttattgcaatgcacgg
cgtggcctccagttcagtaatgctgatagttcataaaccataccgagacgcagttgtaga
attgctccgtctccgtgttatttggacaaagtgccgttggagatctggaaatgcggttgg
cga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATGCTTTAATGTTCACGCTTCCC 131 225 450 Antisense
GACTTTCACCTCTGGCTTGAAGAAC 644 371 565 Antisense
GAACCAATGCTCTATGCAATTCATT 58 345 586 Antisense
ATTCATTATGGTCTCACCGCACTAG 630 11 604 Antisense
TCACCGCACTAGTTATCTCGTTGGA 511 625 617 Antisense
CTGCCTTATTCCTCTCGAGTACAAA 680 233 665 Antisense
TATTTCCAATTGCGTATCTTATTAC 324 661 776 Antisense
TATTGCAATGCACGGCGTGGCCTCC 529 661 855 Antisense
GGCCTCCAGTTCAGTAATGCTGATA 165 543 873 Antisense
GCAGTTGTAGAATTGCTCCGTCTCC 244 313 919 Antisense
GGAGATCTGGAAATGCGGTTGGCGA 291 519 968 Antisense
Sequence Source Affymetrix Proprietary Database