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[186541_at]

Description F43C1.5 /REP_DB=WormBase Gene ID /WP=CE28026 /TR=SW:Q09394 /GB=CAA87059.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_high_8_8 > 38      6grp_highest_nonorm > 90      6grp_total > 83      4grp_total > 42      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 39
(-3)
P 		127.5
(3)
P 		94.8
(0.8)
P 		71.5
(-0.8)
A 		89
B 37.2
(-3)
P 		113.6
(3)
P 		82
(0.5)
P 		39.8
(-2.8)
A 		76
C 81.6
(-3)
A 		96.9
(3)
A 		86.6
(-1)
P 		94.1
(1.9)
P 		15
avr 52.6
(-3) 		112.7
(3) 		87.8
(0.5) 		68.5
(-1.4) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 57.2
(-3)
P 		83.3
(-2.1)
P 		153.4
(0.3)
P 		203.6
(2)
P 		231.3
(3)
P 		143.4
(-0)
P 		174
B 67.4
(-3)
P 		116.3
(-1.2)
P 		140.3
(-0.3)
P 		191
(1.6)
P 		228.9
(3)
P 		135.3
(-0.5)
P 		162
C 86.3
(-3)
P 		150.9
(-0.8)
P 		168.6
(-0.2)
P 		211
(1.3)
P 		261.4
(3)
P 		138.1
(-1.2)
P 		175
avr 70.3
(-3) 		116.8
(-1.4) 		154.1
(-0) 		201.9
(1.6) 		240.5
(3) 		138.9
(-0.6) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 14.2
(-1.7)
P 		27.7
(3)
P 		24.8
(2)
P 		10.5
(-3)
A 		17
B 11.9
(-2)
P 		28.1
(3)
P 		19
(0.2)
P 		8.5
(-3)
A 		20
C 27
(1.7)
A 		27.9
(2)
A 		30.2
(3)
P 		15.9
(-3)
P 		14
avr 17.7
(-0.8) 		27.9
(3) 		24.7
(1.8) 		11.6
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 10.5
(-3)
P 		29.6
(-1.1)
P 		33.4
(-0.7)
P 		51.6
(1.2)
P 		69.8
(3)
P 		34.9
(-0.5)
P 		59
B 23.5
(-3)
P 		38.7
(-1.7)
P 		34.1
(-2.1)
P 		50.6
(-0.7)
P 		93
(3)
P 		50.5
(-0.7)
P 		70
C 32
(-3)
P 		46
(-1.4)
P 		42.9
(-1.8)
P 		42.4
(-1.8)
P 		84.6
(3)
P 		46.2
(-1.4)
P 		53
avr 22
(-3) 		38.1
(-1.4) 		36.8
(-1.5) 		48.2
(-0.4) 		82.5
(3) 		43.9
(-0.8) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7945
Sequence Type Exemplar sequence
Representative Public ID F43C1.5 NCBI
Target Description F43C1.5 /REP_DB=WormBase Gene ID /WP=CE28026 /TR=SW:Q09394 /GB=CAA87059.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065447 NCBI Caenorhabditis elegans F43C1.5 (F43C1.5) mRNA, complete cds. 11/11 None
GENEFINDER00000025143 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4229167:4230368:1 11/11 None
F43C1.5 ENSEMBL cdna:known chromosome:CEL140:III:4229167:4230363:1 gene:F43C1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025133 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4227927-4230363(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C1.5
Entrez Gene 185692 Entrez gene
SwissProt Q09394 EMBL-EBI
WormBase CE28026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87059 Hypothetical protein F43C1.5 [Caenorhabditis elegans] ref|NP_497848.1| F43C1.5 [Caenorhabditis elegans] sp|Q09394|YR75_CAEEL Hypothetical protein F43C1.5 in chromosome III 1.0E-100
blast T22120 hypothetical protein F43C1.5 - Caenorhabditis elegans 1.0E-100
blast CAA87059 Hypothetical protein F43C1.5 [Caenorhabditis elegans] ref|NP_497848.1| F43C1.5 [Caenorhabditis elegans] sp|Q09394|YR75_CAEEL Hypothetical protein F43C1.5 in chromosome III 2.0E-92
blast T22120 hypothetical protein F43C1.5 - Caenorhabditis elegans 2.0E-92
blast CAE73724 Hypothetical protein CBG21243 [Caenorhabditis briggsae] 3.0E-53
blast CAE73724 Hypothetical protein CBG21243 [Caenorhabditis briggsae] 8.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR003892 EMBL-EBI Ubiquitin system component Cue 2.1E-14
Sequence
Target Sequence 
>C. ELEGANS:186541_AT
ggactttcaagctatgtttcccagtctaagcaattcacatattgaatatgttctacggaa
atatgatggagatgtttcagccactattaatgagctactttatgataacacgccaactac
aacgacttctgaatctattccacatggaggagacttaacaaaattaaggcagcgaaggca
tgaaataaacgaaaaactgagagaaaatcaaaaatttttggatacggttacagatgtgga
aattgcgagagcatatgaagaccaacaactggccttattacttgaacaccgagaagtgaa
cacccttatcagtgaggagaaaaagaaaaagtcatgttctgactcatcttctattcaaga
atcgcgccggcatgtgaaaattcccgggaaaaattcgaaaaattctaaaattagtgtgaa
caaagcgaaaaaattggaaccgagacgacgatcggacgaagatcgtgttccagatggacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTTTCAAGCTATGTTTCCCAGT 679 523 210 Antisense
GTTTCCCAGTCTAAGCAATTCACAT 306 451 225 Antisense
GGAGATGTTTCAGCCACTATTAATG 684 517 277 Antisense
TAACACGCCAACTACAACGACTTCT 682 639 315 Antisense
ACGACTTCTGAATCTATTCCACATG 146 93 331 Antisense
ACTGGCCTTATTACTTGAACACCGA 361 95 477 Antisense
GAAGTGAACACCCTTATCAGTGAGG 447 333 502 Antisense
TCATGTTCTGACTCATCTTCTATTC 161 623 541 Antisense
ATCGCGCCGGCATGTGAAAATTCCC 482 37 570 Antisense
GGAACCGAGACGACGATCGGACGAA 375 529 645 Antisense
ACGAAGATCGTGTTCCAGATGGACC 614 91 665 Antisense
Sequence Source Affymetrix Proprietary Database