[Home] | [Total List]

[186540_at]

Description C35D10.13 /REP_DB=WormBase Gene ID /WP=CE01194 /TR=Q18490 /GB=AAA62569.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 98      6grp_total > 79      4grp_total > 41      6grp_highest_sub > Da      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 496.5
(-3)
P 		918
(3)
P 		758.5
(0.7)
P 		704
(-0)
P 		422
B 501.6
(-3)
P 		843.5
(2.6)
P 		868
(3)
P 		649.7
(-0.6)
P 		366
C 563.2
(-3)
P 		971.1
(3)
P 		862.9
(1.4)
P 		774.6
(0.1)
P 		408
avr 520.4
(-3) 		910.9
(3) 		829.8
(1.8) 		709.4
(-0.1) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1439
1 2 3 4 5 6 range
A 761.1
(-1.6)
P 		580.7
(-2.6)
P 		511.1
(-3)
P 		643.2
(-2.2)
P 		944.1
(-0.5)
P 		1559.1
(3)
P 		1048
B 731.9
(-1.4)
P 		585.2
(-2.1)
P 		387.6
(-3)
P 		492.9
(-2.5)
P 		1104.8
(0.3)
P 		1709.6
(3)
P 		1322
C 671.4
(-2.1)
P 		614.3
(-2.4)
P 		470
(-3)
P 		676
(-2.1)
P 		1011
(-0.6)
P 		1826.2
(3)
P 		1356
avr 721.5
(-1.7) 		593.4
(-2.3) 		456.2
(-3) 		604
(-2.3) 		1020
(-0.3) 		1698.3
(3) 		1242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 180.8
(1.8)
P 		199.3
(3)
P 		198.3
(2.9)
P 		103.1
(-3)
P 		96
B 160
(-1.2)
P 		208.3
(3)
P 		201.1
(2.4)
P 		138.5
(-3)
P 		70
C 186.4
(-1)
P 		279.2
(2.2)
P 		300.8
(3)
P 		130.6
(-3)
P 		170
avr 175.7
(-0.2) 		228.9
(2.8) 		233.4
(3) 		124.1
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 543
1 2 3 4 5 6 range
A 140.3
(-2.4)
P 		206.5
(-0.9)
P 		111.3
(-3)
P 		163.1
(-1.8)
P 		284.9
(0.9)
P 		379.6
(3)
P 		268
B 254.7
(-1.2)
P 		194.8
(-1.9)
P 		94.1
(-3)
P 		130.5
(-2.6)
P 		448.9
(0.9)
P 		637.5
(3)
P 		543
C 248.8
(-1.4)
P 		187.5
(-2.2)
P 		119.6
(-3)
P 		135.9
(-2.8)
P 		327.1
(-0.5)
P 		611.3
(3)
P 		492
avr 214.6
(-1.5) 		196.3
(-1.8) 		108.3
(-3) 		143.2
(-2.5) 		353.6
(0.4) 		542.8
(3) 		435
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186540_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7878
Sequence Type Exemplar sequence
Representative Public ID C35D10.13 NCBI
Target Description C35D10.13 /REP_DB=WormBase Gene ID /WP=CE01194 /TR=Q18490 /GB=AAA62569.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065618(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065618 NCBI Caenorhabditis elegans C35D10.13 (C35D10.13) mRNA, complete cds. 11/11 None
SNAP00000029553 ENSEMBL cdna:SNAP chromosome:CEL140:III:4877678:4878271:-1 11/11 None
GENEFINDER00000029565 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4877678:4878271:-1 11/11 None
C35D10.13 ENSEMBL cdna:known chromosome:CEL140:III:4877678:4878271:-1 gene:C35D10.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4877677-4878271(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35D10.13
Entrez Gene 183241 Entrez gene
SwissProt Q18490 EMBL-EBI
WormBase CE01194 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498019 C35D10.13 [Caenorhabditis elegans] gb|AAA62569.1| Hypothetical protein C35D10.13 [Caenorhabditis elegans] 1.0E-74
blast CAE71098 Hypothetical protein CBG17949 [Caenorhabditis briggsae] 3.0E-34
Sequence
Target Sequence 
>C. ELEGANS:186540_AT
gactactgccatccaatatcaagttattcctttagctgaccgtgagcacagcaacaaagt
ggcgtcgattctggaaaacaagtacaaaactgcgacaaataaacgaatcacattgaatga
gcgcttcggagttctcgaaaaggggtacactattcaagccactgagccagagactgtcaa
aaacgattctgatgtcttctttgtcgttcacgaccggaacttgaattcgaaaaaggaatt
tgtggagaactatctcgcaaaaaatccaattgtcaattcaccggagaaagttttcgaaga
ggaggacaaggagaatgcaccgaccaagaaagctgttttgaagccgtcctctactgatga
gaagaagctcaccagctcggatatctacattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTACTGCCATCCAATATCAAGTT 494 373 15 Antisense
AAGTTATTCCTTTAGCTGACCGTGA 208 157 35 Antisense
GCAACAAAGTGGCGTCGATTCTGGA 383 317 65 Antisense
TGAATGAGCGCTTCGGAGTTCTCGA 465 575 128 Antisense
AAGGGGTACACTATTCAAGCCACTG 184 93 154 Antisense
CAAGCCACTGAGCCAGAGACTGTCA 481 185 169 Antisense
TGATGTCTTCTTTGTCGTTCACGAC 133 567 204 Antisense
GAATGCACCGACCAAGAAAGCTGTT 548 329 327 Antisense
AAAGCTGTTTTGAAGCCGTCCTCTA 6 125 343 Antisense
GAAGCCGTCCTCTACTGATGAGAAG 401 343 354 Antisense
TCACCAGCTCGGATATCTACATTCA 108 625 383 Antisense
Sequence Source Affymetrix Proprietary Database