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[186539_s_at]

Description Y59E9AL.3 /REP_DB=WormBase Gene ID /WP=CE22659 /TR=Q9N2L4 /GB=AAF60820.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 27.1
(3)
A 		15.5
(-0.2)
A 		5.3
(-3)
A 		12
(-1.2)
A 		22
B 16.6
(-1.1)
A 		42.7
(3)
A 		14.5
(-1.5)
A 		4.9
(-3)
A 		38
C 27.1
(-1.1)
A 		28.3
(-0.8)
A 		19.4
(-3)
A 		43.3
(3)
A 		24
avr 23.6
(1) 		28.8
(3) 		13.1
(-3) 		20.1
(-0.3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1915
1 2 3 4 5 6 range
A 6.2
(-3)
A 		8.3
(-3)
A 		8.3
(-3)
A 		81.9
(-2.7)
A 		845.5
(0.2)
P 		1602
(3)
P 		1596
B 17.6
(-3)
A 		52
(-2.9)
A 		11.1
(-3)
A 		89.5
(-2.8)
A 		936
(-0.1)
P 		1921.1
(3)
P 		1910
C 68.5
(-2.8)
A 		62
(-2.8)
A 		22
(-3)
A 		100.2
(-2.7)
A 		1009.7
(1.1)
P 		1475.4
(3)
P 		1453
avr 30.8
(-2.9) 		40.8
(-2.9) 		13.8
(-3) 		90.5
(-2.7) 		930.4
(0.3) 		1666.2
(3) 		1652
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 9.9
(3)
A 		3.4
(-1.6)
A 		1.4
(-3)
A 		1.8
(-2.7)
A 		9
B 5.3
(-0.3)
A 		10.6
(3)
A 		3.4
(-1.5)
A 		1
(-3)
A 		10
C 9
(3)
A 		8.1
(0.5)
A 		6.8
(-3)
A 		7.3
(-1.6)
A 		2
avr 8.1
(3) 		7.4
(2.1) 		3.9
(-2.4) 		3.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 715
1 2 3 4 5 6 range
A 1.1
(-3)
A 		3
(-3)
A 		1.8
(-3)
A 		20.8
(-2.7)
A 		255.1
(0.9)
P 		390
(3)
P 		389
B 6.1
(-3)
A 		17.3
(-2.9)
A 		2.7
(-3)
A 		23.7
(-2.8)
A 		380.3
(0.2)
P 		716.4
(3)
P 		714
C 25.4
(-2.8)
A 		18.9
(-2.8)
A 		5.6
(-3)
A 		20.2
(-2.8)
A 		326.7
(0.9)
P 		493.9
(3)
P 		488
avr 10.9
(-2.9) 		13.1
(-2.9) 		3.4
(-3) 		21.6
(-2.8) 		320.7
(0.6) 		533.4
(3) 		530
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186539_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10529
Sequence Type Exemplar sequence
Representative Public ID Y59E9AL.3 NCBI
Target Description Y59E9AL.3 /REP_DB=WormBase Gene ID /WP=CE22659 /TR=Q9N2L4 /GB=AAF60820.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028366(11), NM_001028365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028366 NCBI Caenorhabditis elegans Y59E9AL.3 (Y59E9AL.3) mRNA, complete cds. 11/11 None
NM_001028365 NCBI Caenorhabditis elegans Y59E9AL.2 (Y59E9AL.2) mRNA, complete cds. 11/11 None
SNAP00000011357 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5218821:5220118:1 11/11 None
SNAP00000011361 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5226880:5228177:1 11/11 None
GENEFINDER00000011366 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5226880:5228177:1 11/11 None
GENEFINDER00000011368 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5218821:5220118:1 11/11 None
Y59E9AL.3 ENSEMBL cdna:known chromosome:CEL140:IV:5218821:5220118:1 gene:Y59E9AL.3 11/11 None
Y59E9AL.2 ENSEMBL cdna:known chromosome:CEL140:IV:5226880:5228207:1 gene:Y59E9AL.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4930855-4932097(+) 87.78 91.45
chrIV:5218826-5220124(+) 95.9 100.0
chrIV:5226885-5228183(+) 95.72 99.83
Public Domain and Genome References
Gene Title

Ensembl Y59E9AL.3
Y59E9AL.2
Entrez Gene 3565257 Entrez gene
3565611 Entrez gene
SwissProt Q9N2L4 EMBL-EBI
WormBase CE22659 Wormbase
CE22659 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60821 Hypothetical protein Y59E9AL.3 [Caenorhabditis elegans] gb|AAF60820.1| Hypothetical protein Y59E9AL.2 [Caenorhabditis elegans] ref|NP_001023536.1| Y59E9AL.2 [Caenorhabditis elegans] ref|NP_001023537.1| Y59E9AL.3 [Caenorhabditis elegans] 0.0
blast AAA68740 Hypothetical protein ZK546.7 [Caenorhabditis elegans] ref|NP_494900.1| ZK546.7 [Caenorhabditis elegans] 0.0
blast CAE56304 Hypothetical protein CBG23962 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:186539_S_AT
ccaccacactgcgaatgcgagaactgtcctaaaccaccaccaccaccaccaatcccacca
ccgggcccaccaccaccacgtgtcatacacgacgaatggatcgatatccgagagggagat
ccatggcctactcgcaagcttgttcaagctttggataagtctttggatactcttccagga
gtcagtgccgatcaatatgttgccttgtggtacatgcagggtgaacctgttatgggtcgt
gtctggaatgagggaggaaaggttgctgccaacttctcttggttcaacaacgaatactgc
aagaacgttggatccattcaattgcttgttcgtcttggaccacacgtcgttggatacgag
tatggatggattccattcccagaagctgccaactttgatgctggaaagatctggaagcca
gttcacgttaacaaccacaagggagacatctcagttggagtcgttaaccttccaggcgga
aaacagatccttgccaaggttgatgttcgcaacgagtcgtacggatatggttaccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCACACTGCGAATGCGAGAACT 508 273 529 Antisense
AATGCGAGAACTGTCCTAAACCACC 363 167 542 Antisense
GCCTACTCGCAAGCTTGTTCAAGCT 695 281 654 Antisense
GTCTTTGGATACTCTTCCAGGAGTC 463 469 687 Antisense
GTCAGTGCCGATCAATATGTTGCCT 257 467 709 Antisense
TACTGCAAGAACGTTGGATCCATTC 691 645 823 Antisense
GGATCCATTCAATTGCTTGTTCGTC 183 513 838 Antisense
AATTGCTTGTTCGTCTTGGACCACA 631 177 848 Antisense
GAAGCTGCCAACTTTGATGCTGGAA 447 343 910 Antisense
GAAGCCAGTTCACGTTAACAACCAC 530 343 942 Antisense
GAGTCGTACGGATATGGTTACCAAG 325 401 1042 Antisense
Sequence Source Affymetrix Proprietary Database