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[186538_s_at]

Description F15G9.5 /REP_DB=WormBase Gene ID /WP=CE23661 /TR=SW:Q10037 /GB=CAA87334.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 68.2
(-3)
A 		72.1
(-2.8)
A 		71.3
(-2.8)
A 		167.4
(3)
P 		99
B 45
(-0.4)
A 		62.8
(1)
A 		11.3
(-3)
A 		88.9
(3)
P 		78
C 61.4
(1.7)
A 		15.7
(-3)
A 		25.7
(-2)
A 		74.1
(3)
P 		58
avr 58.2
(-1.2) 		50.2
(-1.9) 		36.1
(-3) 		110.1
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 14.2
(-2.6)
A 		59.6
(1.5)
A 		76.7
(3)
A 		65.5
(2)
A 		9.8
(-3)
A 		33.3
(-0.9)
A 		67
B 90.2
(3)
P 		80.9
(1.8)
A 		66.7
(0.1)
A 		75.2
(1.1)
P 		60.3
(-0.7)
A 		41.7
(-3)
A 		49
C 115.2
(3)
P 		97
(2)
A 		48.5
(-0.8)
A 		80.6
(1)
A 		10.7
(-3)
A 		91.9
(1.7)
A 		105
avr 73.2
(2.3) 		79.2
(3) 		64
(1.3) 		73.8
(2.4) 		26.9
(-3) 		55.6
(0.3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 24.8
(3)
A 		15.7
(-3)
A 		18.6
(-1.1)
A 		24.5
(2.8)
P 		9
B 14.3
(1.3)
A 		15.5
(1.7)
A 		2.6
(-3)
A 		18.9
(3)
P 		16
C 20.3
(3)
A 		4.5
(-3)
A 		9
(-1.3)
A 		12.5
(0)
P 		16
avr 19.8
(3) 		11.9
(-1.9) 		10.1
(-3) 		18.6
(2.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 2.6
(-3)
A 		21.2
(3)
A 		16.7
(1.5)
A 		16.6
(1.5)
A 		3
(-2.9)
A 		8.1
(-1.2)
A 		19
B 31.4
(3)
P 		26.9
(1.3)
A 		16.2
(-2.7)
A 		19.9
(-1.3)
P 		24.5
(0.4)
A 		15.5
(-3)
A 		16
C 42.7
(3)
P 		29.6
(1)
A 		12.3
(-1.7)
A 		16.2
(-1.1)
A 		3.5
(-3)
A 		30.8
(1.2)
A 		39
avr 25.6
(2.9) 		25.9
(3) 		15.1
(-1.2) 		17.6
(-0.2) 		10.3
(-3) 		18.1
(0) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186538_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17272
Sequence Type Exemplar sequence
Representative Public ID F15G9.5 NCBI
Target Description F15G9.5 /REP_DB=WormBase Gene ID /WP=CE23661 /TR=SW:Q10037 /GB=CAA87334.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077236(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077236 NCBI Caenorhabditis elegans F15G9.5 (F15G9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000012499 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9733240:9734333:-1 11/11 None
F15G9.5 ENSEMBL cdna:known chromosome:CEL140:X:9733240:9737681:-1 gene:F15G9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9733239-9737666(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15G9.5
Entrez Gene 181185 Entrez gene
SwissProt Q10037 EMBL-EBI
WormBase CE23661 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87334 Hypothetical protein F15G9.5 [Caenorhabditis elegans] ref|NP_509637.1| F15G9.5 [Caenorhabditis elegans] sp|Q10037|YSI5_CAEEL Hypothetical protein F15G9.5 in chromosome X 1.0E-169
blast CAE69763 Hypothetical protein CBG16044 [Caenorhabditis briggsae] 1.0E-155
blast CAA87334 Hypothetical protein F15G9.5 [Caenorhabditis elegans] ref|NP_509637.1| F15G9.5 [Caenorhabditis elegans] sp|Q10037|YSI5_CAEEL Hypothetical protein F15G9.5 in chromosome X 1.0E-129
blast CAE69763 Hypothetical protein CBG16044 [Caenorhabditis briggsae] 1.0E-126
blast G89614 protein F15G9.5 [imported] - Caenorhabditis elegans 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:186538_S_AT
gaacatcagtgtatggcagcccatcatcataatatcctacgaccaaatggtgaacgatgg
gagcgcgaggcatgttccagatgtcggatgcatggcgctgagttagaaggtctcccatgc
gatgataccgattcagcgagactttgcattggcggccgctgttcaaactctgtttgtcac
actaagtcacctggatccgtgtgtgatcgaaaaatggaaaaactatgcgttgataacacc
tgtgaaaatccatgtgcaagatatgcaccacatctaatggtgtgtgactgtccatcaata
gaccaagacacaggcttcgcatcagaagatcgatgtcaattgtgctgttatgatttcaat
ttgaaaccaacaaatcgtcgatgtcaaaacgcctatcggaaatacaaaatcatggatatg
tttcaaaagccaatttggcgcgttggtctcgaatgtgctggtggaaaagtttgcaacaaa
tacggagtctgctcgtcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATCAGTGTATGGCAGCCCATC 340 351 268 Antisense
GCAGCCCATCATCATAATATCCTAC 305 315 283 Antisense
GCGCGAGGCATGTTCCAGATGTCGG 249 287 330 Antisense
AGATGTCGGATGCATGGCGCTGAGT 8 69 346 Antisense
AGGTCTCCCATGCGATGATACCGAT 656 57 375 Antisense
AGCGAGACTTTGCATTGGCGGCCGC 275 81 402 Antisense
GGCCGCTGTTCAAACTCTGTTTGTC 290 543 421 Antisense
CACTAAGTCACCTGGATCCGTGTGT 650 195 447 Antisense
AAGCCAATTTGGCGCGTTGGTCTCG 530 133 694 Antisense
GTTGGTCTCGAATGTGCTGGTGGAA 433 435 709 Antisense
CAAATACGGAGTCTGCTCGTCTTCC 698 191 744 Antisense
Sequence Source Affymetrix Proprietary Database