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[186537_at]

Description Y102A5C.27 /REP_DB=WormBase Gene ID /WP=CE20399 /TR=Q9XX67 /GB=CAA20968.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 18
(-1.5)
A 		6.6
(-3)
A 		6.3
(-3)
A 		53.9
(3)
A 		48
B 9.4
(-2)
A 		13
(-1.5)
A 		2.6
(-3)
A 		43.6
(3)
A 		41
C 4.1
(-3)
A 		22.4
(-1.5)
A 		18.9
(-1.8)
A 		75.2
(3)
A 		71
avr 10.5
(-2.9) 		14
(-2.4) 		9.3
(-3) 		57.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 20.5
(-0.3)
A 		30.9
(3)
A 		26.3
(1.5)
A 		20.1
(-0.4)
A 		26.2
(1.5)
A 		12.1
(-3)
A 		19
B 3.5
(-3)
A 		14.4
(0.2)
A 		10.1
(-1.1)
A 		6.6
(-2.1)
A 		23.9
(3)
A 		4
(-2.9)
A 		20
C 16.2
(-0.5)
A 		35.6
(2.8)
A 		2.1
(-3)
A 		36.6
(3)
A 		6.2
(-2.3)
A 		3.1
(-2.8)
A 		35
avr 13.4
(-1) 		27
(3) 		12.8
(-1.1) 		21.1
(1.3) 		18.8
(0.6) 		6.4
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.5
(1.7)
A 		1.4
(-3)
A 		1.6
(-2.8)
A 		7.9
(3)
A 		7
B 3
(-1.3)
A 		3.2
(-1.2)
A 		0.6
(-3)
A 		9.3
(3)
A 		9
C 1.3
(-3)
A 		6.4
(-0.3)
A 		6.6
(-0.2)
A 		12.7
(3)
A 		11
avr 3.6
(-2.4) 		3.7
(-2.3) 		2.9
(-3) 		10
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.8
(-2.3)
A 		11
(3)
A 		5.7
(-0.9)
A 		5.1
(-1.4)
A 		7.9
(0.7)
A 		2.9
(-3)
A 		8
B 1.2
(-3)
A 		4.8
(-0.5)
A 		2.4
(-2.2)
A 		1.8
(-2.6)
A 		9.7
(3)
A 		1.5
(-2.8)
A 		9
C 6
(0.2)
A 		10.9
(3)
A 		0.5
(-3)
A 		7.4
(1)
A 		2
(-2.1)
A 		1
(-2.7)
A 		10
avr 3.7
(-1.4) 		8.9
(3) 		2.9
(-2.1) 		4.8
(-0.5) 		6.5
(1) 		1.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13732
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.27 NCBI
Target Description Y102A5C.27 /REP_DB=WormBase Gene ID /WP=CE20399 /TR=Q9XX67 /GB=CAA20968.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074897(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074897 NCBI Caenorhabditis elegans Y102A5C.27 (Y102A5C.27) mRNA, complete cds. 11/11 None
GENEFINDER00000003176 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16988948:16991242:-1 11/11 None
Y102A5C.27 ENSEMBL cdna:known chromosome:CEL140:V:16988948:16991242:-1 gene:Y102A5C.27 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003164 6/11 Cross Hyb Matching Probes None
SNAP00000003165 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16988947-16991242(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5C.27
Entrez Gene 190850 Entrez gene
SwissProt Q9XX67 EMBL-EBI
WormBase CE20399 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20968 Hypothetical protein Y102A5C.27 [Caenorhabditis elegans] ref|NP_507298.1| Y102A5C.27 [Caenorhabditis elegans] 1.0E-142
blast CAA20968 Hypothetical protein Y102A5C.27 [Caenorhabditis elegans] ref|NP_507298.1| Y102A5C.27 [Caenorhabditis elegans] 6.0E-73
Sequence
Target Sequence 
>C. ELEGANS:186537_AT
gaatccagtccagcgatagatcctatgctggaaagtccctatggattctttataaggaaa
ctgctgcaaacaatgatggatgttcacagaaaaaaattgaatgttcatatctaacctctg
gcaaatgtccaacaaaacctgagattgttgcagtgaatgctgatggcgaattttctctga
ccacagacacttcatttaacactgcatcgtggattattacatgcaggaaagacggaaaat
tatcaacaagcaacagtgggacagaactatttgatgtgactgcgattaaatcatcggaat
gtgatgcatccgtcacgtgtgatctaaatgcgattactcccatatcggacagtgtgtacg
aattcaacagcattgtacaacctgcagacagtgagggatgtgtaaagacaaccattacat
gcaaaaaagcatcccctgaagcttgtccattcacaccagatattgttgctgtgaatgcgg
acggcgagttttctgtggtagccaactttaatgtgaatcaggcttcgtgggatgtaacgt
gcaggaaaaacggaaaactgtcactcacccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCAGTCCAGCGATAGATCCTA 692 329 173 Antisense
GAATGTTCATATCTAACCTCTGGCA 41 333 271 Antisense
GATGGCGAATTTTCTCTGACCACAG 176 407 334 Antisense
GACACTTCATTTAACACTGCATCGT 436 367 358 Antisense
GTGATGCATCCGTCACGTGTGATCT 557 481 473 Antisense
GATTACTCCCATATCGGACAGTGTG 248 429 504 Antisense
AAAAGCATCCCCTGAAGCTTGTCCA 668 131 597 Antisense
AAGCTTGTCCATTCACACCAGATAT 372 151 611 Antisense
TTGTTGCTGTGAATGCGGACGGCGA 278 705 635 Antisense
CGGACGGCGAGTTTTCTGTGGTAGC 442 241 650 Antisense
AAACGGAAAACTGTCACTCACCCAG 105 127 720 Antisense
Sequence Source Affymetrix Proprietary Database