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[186536_at]

Description Y55F3AM.7 /REP_DB=WormBase Gene ID /WP=CE25489 /TR=Q9N374 /GB=AAF60799.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 18.8
(-1.8)
A 		14
(-2.2)
A 		5.7
(-3)
A 		69.9
(3)
A 		64
B 5.3
(-3)
A 		29.5
(-0)
A 		10.7
(-2.3)
A 		53.8
(3)
A 		49
C 4.4
(-3)
A 		45.4
(2)
A 		19.9
(-1.1)
A 		53.9
(3)
P 		50
avr 9.5
(-3) 		29.6
(-0.6) 		12.1
(-2.7) 		59.2
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 15.2
(-1.9)
A 		1.5
(-3)
A 		35.6
(-0.2)
P 		74
(3)
A 		64.4
(2.2)
P 		42.5
(0.4)
A 		73
B 28.3
(-3)
A 		40.1
(-1.6)
A 		38.7
(-1.8)
A 		32.5
(-2.5)
A 		74.2
(2.3)
P 		79.9
(3)
P 		52
C 7
(-3)
A 		23.9
(-1.7)
A 		26.2
(-1.5)
A 		66.3
(1.5)
A 		86.4
(3)
P 		80.4
(2.5)
P 		79
avr 16.8
(-3) 		21.8
(-2.5) 		33.5
(-1.3) 		57.6
(1.2) 		75
(3) 		67.6
(2.2) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.9
(0.7)
A 		3
(-2)
A 		1.5
(-3)
A 		10.2
(3)
A 		9
B 1.7
(-3)
A 		7.3
(0.4)
A 		2.5
(-2.5)
A 		11.5
(3)
A 		10
C 1.5
(-3)
A 		13
(3)
A 		6.9
(-0.2)
A 		9.1
(1)
P 		12
avr 3.4
(-3) 		7.8
(0.8) 		3.6
(-2.8) 		10.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.8
(-2.3)
A 		0.5
(-3)
A 		7.7
(-0.7)
P 		18.8
(2.8)
A 		19.4
(3)
P 		10.3
(0.1)
A 		19
B 9.9
(-2.6)
A 		13.3
(-1.7)
A 		9.4
(-2.8)
A 		8.6
(-3)
A 		30.2
(3)
P 		29.8
(2.9)
P 		22
C 2.6
(-3)
A 		7.3
(-1.9)
A 		6.7
(-2)
A 		13.3
(-0.5)
A 		28
(3)
P 		26.9
(2.7)
P 		25
avr 5.1
(-3) 		7
(-2.5) 		7.9
(-2.2) 		13.6
(-0.5) 		25.9
(3) 		22.3
(2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10484
Sequence Type Exemplar sequence
Representative Public ID Y55F3AM.7 NCBI
Target Description Y55F3AM.7 /REP_DB=WormBase Gene ID /WP=CE25489 /TR=Q9N374 /GB=AAF60799.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030070 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:984754:990596:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030048 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:985607-992257(-) 84.1 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86307 Hypothetical protein Y55F3AM.7 [Caenorhabditis elegans] 1.0E-105
blast CAE63237 Hypothetical protein CBG07600 [Caenorhabditis briggsae] 2.0E-60
blast CAA93744 Hypothetical protein C27C12.2 [Caenorhabditis elegans] ref|NP_510462.1| C27C12.2 [Caenorhabditis elegans] 3.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.8E-8
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.2E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.0E-5
Sequence
Target Sequence 
>C. ELEGANS:186536_AT
tcgccaatggtagagcacttgttgcaaaacctcactaacaaagcaggtgtgccagaatca
gttgtggactcgaaaacggttggattgaattatcaagaaccatccgattcgaaaactcac
acgtcattttcagacagcgctagcttggcacatttcgagctaaaaactgagccaatggat
gactacagctacaacttctcagataatgacttcaattccttcaagttttcatccactcct
gaagagccaaaaaacattggctgccaaaaaatgaagtcctcaaagatgcatctccaagac
agaccgtacaagtgcccacgagatgaatgtgacaagaagttctcaagaagtgacgaactg
acgagacatattaggattcatacaggccaaaagccatttcagtgccgaatttgtatgcgt
cgtttctcccgatcggaccatttgacgacccacgtgcgcactcacactggcgaaaaacca
tactcctgcgacatttgcggcaaaaaatttgcgcgatgtgatgaacgaacgcggcacaca
aaaattcacaagaaatcggtaactacccgatcttcacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCAATGGTAGAGCACTTGTTGC 677 591 622 Antisense
GCACTTGTTGCAAAACCTCACTAAC 130 317 636 Antisense
AGCAGGTGTGCCAGAATCAGTTGTG 30 79 663 Antisense
CATCCGATTCGAAAACTCACACGTC 642 207 722 Antisense
CTCACACGTCATTTTCAGACAGCGC 693 227 737 Antisense
TCAAGTTTTCATCCACTCCTGAAGA 657 631 842 Antisense
CGAATTTGTATGCGTCGTTTCTCCC 444 249 1027 Antisense
CATACTCCTGCGACATTTGCGGCAA 192 215 1100 Antisense
GCGATGTGATGAACGAACGCGGCAC 170 291 1134 Antisense
AACGCGGCACACAAAAATTCACAAG 74 147 1149 Antisense
TCGGTAACTACCCGATCTTCACACA 100 605 1177 Antisense
Sequence Source Affymetrix Proprietary Database