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[186535_at] 7TM chemoreceptor, srt family

Description T28A11.15 /REP_DB=WormBase Gene ID /WP=CE14307 /TR=P91511 /GB=AAC48119.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 01      6grp_total_sub > Hat      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 1.8
(-3)
A 		7
(-2.2)
A 		28.2
(0.9)
A 		42.5
(3)
A 		41
B 26.9
(3)
A 		6.7
(-3)
A 		10.1
(-2)
A 		13.8
(-0.9)
A 		20
C 3.6
(-3)
A 		16.9
(-1.6)
A 		8.4
(-2.5)
A 		62.6
(3)
A 		59
avr 10.8
(-2.9) 		10.2
(-3) 		15.6
(-1.9) 		39.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 8.4
(-2.2)
A 		2.7
(-2.9)
A 		48.8
(3)
A 		4
(-2.7)
A 		8
(-2.2)
A 		2
(-3)
A 		47
B 21.8
(-0.4)
A 		46.9
(3)
A 		2.7
(-3)
A 		6.1
(-2.5)
A 		11.3
(-1.8)
A 		3.7
(-2.9)
A 		44
C 6
(-2.8)
A 		55.3
(3)
A 		4.1
(-3)
A 		23.9
(-0.7)
A 		4.5
(-3)
A 		37.8
(0.9)
A 		51
avr 12.1
(-2.1) 		35
(3) 		18.5
(-0.7) 		11.3
(-2.2) 		7.9
(-3) 		14.5
(-1.5) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.6
(-3)
A 		1.5
(-2.2)
A 		7.4
(3)
A 		6.2
(1.9)
A 		7
B 8.6
(3)
A 		1.7
(-3)
A 		2.3
(-2.5)
A 		2.9
(-2)
A 		7
C 1.2
(-3)
A 		4.8
(-0.7)
A 		2.9
(-1.9)
A 		10.5
(3)
A 		9
avr 3.5
(-1.7) 		2.7
(-3) 		4.2
(-0.6) 		6.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.5
(-2.4)
A 		1
(-2.7)
A 		10.6
(3)
A 		1
(-2.7)
A 		2.4
(-1.9)
A 		0.5
(-3)
A 		10
B 7.6
(-0.2)
A 		15.6
(3)
A 		0.7
(-3)
A 		1.6
(-2.6)
A 		4.6
(-1.4)
A 		1.4
(-2.7)
A 		15
C 2.2
(-2.5)
A 		16.9
(3)
A 		1
(-3)
A 		4.8
(-1.6)
A 		1.5
(-2.8)
A 		12.7
(1.4)
A 		16
avr 3.8
(-2.1) 		11.2
(3) 		4.1
(-1.9) 		2.5
(-3) 		2.8
(-2.8) 		4.9
(-1.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15322
Sequence Type Exemplar sequence
Representative Public ID T28A11.15 NCBI
Target Description T28A11.15 /REP_DB=WormBase Gene ID /WP=CE14307 /TR=P91511 /GB=AAC48119.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071493 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-63) (srt-63) mRNA, complete cds. 11/11 None
T28A11.15 ENSEMBL cdna:known chromosome:CEL140:V:3254429:3255978:-1 gene:T28A11.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028206 5/11 Cross Hyb Matching Probes None
GENEFINDER00000028235 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3254603-3255978(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-63
Ensembl T28A11.15
Entrez Gene 178761 Entrez gene
SwissProt P91511 EMBL-EBI
WormBase CE35788 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503894 Serpentine Receptor, class T family member (srt-63) [Caenorhabditis elegans] gb|AAC48119.2| Serpentine receptor, class t protein 63 [Caenorhabditis elegans] 1.0E-167
blast AAB66003 Serpentine receptor, class t protein 64 [Caenorhabditis elegans] ref|NP_504386.2| Serpentine Receptor, class T family member (srt-64) [Caenorhabditis elegans] 1.0E-129
blast CAE64087 Hypothetical protein CBG08692 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.6E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503894.2 7 15-37,57-79,99-121,128-150,178-200,221-243,253-275
T28A11.15 7 15-37,57-79,99-121,128-150,178-200,221-243,253-275
Sequence
Target Sequence 
>C. ELEGANS:186535_AT
ggcattttcttgattttccctattatttccgagaaagcccaattcttcgtaagaattgtt
ggatgtactgccaactcactttggcttgcaacttttatcattatggcagtgctcgccatc
acccgtattggggtagcattcttccacattaaagcaacaaagtggtctggctggatgatc
gttgctcttgggatcggattcacttatatactcgtagtttggatgatcggttgtgtcacg
caaaatttcgaactcactggaccaagttggtcttatgatatgactgttgaatatgcgagt
ttacttgcgaatctcgagcttgtgctatgtttccctacacttgcactgagctttttttca
tatattcttatcatttccagtatttgcaaggcaaattcctggtttaaaatgagaaacttc
acgttggcatcacttaactgtgggtggatcctattttcacatctcaacttggttcttctc
atctctataaataaaggtgttcgaagtcagattctgaagctattgtgctccaagaaagtg
cctagacaaacttcaaaccttgtgcctgttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTTTCTTGATTTTCCCTATTA 504 533 232 Antisense
CAACTCACTTTGGCTTGCAACTTTT 118 189 303 Antisense
CTCGCCATCACCCGTATTGGGGTAG 443 233 343 Antisense
TGGTCTGGCTGGATGATCGTTGCTC 140 553 394 Antisense
GTTGCTCTTGGGATCGGATTCACTT 576 439 412 Antisense
TCTCGAGCTTGTGCTATGTTTCCCT 433 611 543 Antisense
TCCCTACACTTGCACTGAGCTTTTT 600 595 563 Antisense
GAAACTTCACGTTGGCATCACTTAA 111 357 644 Antisense
TGGGTGGATCCTATTTTCACATCTC 641 553 672 Antisense
TCACATCTCAACTTGGTTCTTCTCA 456 627 688 Antisense
AACTTCAAACCTTGTGCCTGTTCAT 28 139 780 Antisense
Sequence Source Affymetrix Proprietary Database