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[186532_at]

Description Y71H10A.2 /REP_DB=WormBase Gene ID /WP=CE20354 /TR=Q9TZL9 /GB=AAC67415.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 64      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 82      6grp_total > 64      4grp_total > 62      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 581.9
(3)
P 		390.9
(0.1)
P 		403.6
(0.3)
P 		187.5
(-3)
P 		394
B 522.5
(3)
P 		414.6
(0.6)
P 		348.5
(-0.9)
P 		257.3
(-3)
P 		265
C 537.2
(3)
P 		408.6
(-0.6)
P 		483.2
(1.5)
P 		321.1
(-3)
P 		216
avr 547.2
(3) 		404.7
(0.1) 		411.8
(0.2) 		255.3
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 342.6
(2)
P 		273.7
(-1.8)
P 		350.6
(2.5)
P 		312.6
(0.4)
P 		251.6
(-3)
P 		360.1
(3)
P 		109
B 309.8
(0.4)
P 		297
(-0)
P 		373.9
(2.6)
P 		386.2
(3)
P 		209.2
(-3)
P 		369.1
(2.4)
P 		177
C 170.1
(-3)
P 		311.7
(0.9)
P 		385.3
(3)
P 		374.7
(2.7)
P 		219.6
(-1.6)
P 		383.3
(2.9)
P 		215
avr 274.2
(-1) 		294.1
(-0.2) 		369.9
(3) 		357.8
(2.5) 		226.8
(-3) 		370.8
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 211.9
(3)
P 		84.9
(-1.1)
P 		105.5
(-0.5)
P 		27.4
(-3)
P 		185
B 166.6
(3)
P 		102.4
(-0.4)
P 		80.8
(-1.6)
P 		54.8
(-3)
P 		112
C 177.8
(3)
P 		117.5
(0.1)
P 		168.4
(2.5)
P 		54.1
(-3)
P 		124
avr 185.4
(3) 		101.6
(-0.6) 		118.2
(0.1) 		45.4
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 63.2
(-3)
P 		97.3
(3)
P 		76.3
(-0.7)
P 		79.3
(-0.2)
P 		75.9
(-0.8)
P 		87.7
(1.3)
P 		34
B 107.8
(-0.4)
P 		98.8
(-1.4)
P 		90.8
(-2.3)
P 		102.3
(-1)
P 		85
(-3)
P 		137.6
(3)
P 		53
C 63.1
(-3)
P 		95.1
(-0.1)
P 		98.1
(0.2)
P 		75.4
(-1.9)
P 		71.1
(-2.3)
P 		128.3
(3)
P 		65
avr 78
(-2.9) 		97.1
(-0.1) 		88.4
(-1.4) 		85.7
(-1.8) 		77.3
(-3) 		117.9
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18206
Sequence Type Exemplar sequence
Representative Public ID Y71H10A.2 NCBI
Target Description Y71H10A.2 /REP_DB=WormBase Gene ID /WP=CE20354 /TR=Q9TZL9 /GB=AAC67415.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076104 NCBI Caenorhabditis elegans Y71H10A.2 (Y71H10A.2) mRNA, complete cds. 11/11 None
SNAP00000039282 ENSEMBL cdna:SNAP chromosome:CEL140:X:2933365:2937026:1 11/11 None
GENEFINDER00000039285 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2933365:2937026:1 11/11 None
Y71H10A.2.5 ENSEMBL cdna:known chromosome:CEL140:X:2933352:2937721:1 gene:Y71H10A.2 11/11 None
Y71H10A.2.1 ENSEMBL cdna:known chromosome:CEL140:X:2933352:2937277:1 gene:Y71H10A.2 11/11 None
Y71H10A.2.2 ENSEMBL cdna:known chromosome:CEL140:X:2933352:2937694:1 gene:Y71H10A.2 11/11 None
Y71H10A.2.3 ENSEMBL cdna:known chromosome:CEL140:X:2933352:2937731:1 gene:Y71H10A.2 11/11 None
Y71H10A.2.4 ENSEMBL cdna:known chromosome:CEL140:X:2933352:2937694:1 gene:Y71H10A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2933364-2937026(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71H10A.2
Entrez Gene 180582 Entrez gene
SwissProt Q9TZL9 EMBL-EBI
WormBase CE20354 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606033_AT similar to male sterility domain containing 2 cfa
CANINE:1604326_AT similar to male sterility domain containing 2 cfa
CANINE:1596065_AT similar to male sterility domain containing 2 cfa
CANINE_2:CFA.10120.1.S1_AT similar to male sterility domain containing 2 cfa
CANINE_2:CFA.1879.1.S1_S_AT similar to male sterility domain containing 2 cfa
CANINE_2:CFAAFFX.13154.1.S1_S_AT similar to male sterility domain containing 2 cfa
CANINE_2:CFAAFFX.13214.1.S1_AT similar to male sterility domain containing 2 cfa
CANINE_2:CFAAFFX.13214.1.S1_S_AT similar to male sterility domain containing 2 cfa
DROSOPHILA_2:1628207_AT dm
DROSGENOME1:147321_AT dm
CHICKEN:GGAAFFX.11085.1.S1_AT similar to male sterility protein 2-like protein gga
HU35KSUBA:AA446403_AT male sterility domain containing 2 hs
HU35KSUBB:RC_N34349_AT male sterility domain containing 2 hs
U133_X3P:HS2.418339.1.S1_3P_S_AT male sterility domain containing 2 hs
U133_X3P:HS.307120.0.S1_3P_X_AT male sterility domain containing 2 hs
U133_X3P:HS.307120.0.S1_3P_AT male sterility domain containing 2 hs
U133_X3P:HS.288368.0.A2_3P_AT male sterility domain containing 2 hs
U133_X3P:HS.288368.0.A1_3P_AT male sterility domain containing 2 hs
HG-U133_PLUS_2:1558014_S_AT male sterility domain containing 2 hs
HG-U133_PLUS_2:224865_AT male sterility domain containing 2 hs
HG-U133B:224865_AT male sterility domain containing 2 hs
HG-U133_PLUS_2:224866_AT male sterility domain containing 2 hs
HG-U133B:224866_AT male sterility domain containing 2 hs
HG-U133_PLUS_2:234767_AT male sterility domain containing 2 hs
HG-U133B:234767_AT male sterility domain containing 2 hs
HG-U95B:46265_AT male sterility domain containing 2 hs
HG-U95C:63614_R_AT male sterility domain containing 2 hs
HG-U95D:76263_AT male sterility domain containing 2 hs
HG-U95E:87469_AT male sterility domain containing 2 hs
HG-U95E:79458_AT Male sterility domain containing 2 hs
HU35KSUBC:RC_N63395_AT Male sterility domain containing 2 hs
MG-U74BV2:113575_AT male sterility domain containing 2 mm
MG-U74BV2:110322_AT male sterility domain containing 2 mm
MG-U74BV2:115191_AT male sterility domain containing 2 mm
MOE430A:1453550_A_AT male sterility domain containing 2 mm
MOUSE430A_2:1453550_A_AT male sterility domain containing 2 mm
MOUSE430_2:1453550_A_AT male sterility domain containing 2 mm
MOE430A:1426370_AT male sterility domain containing 2 mm
MOUSE430A_2:1426370_AT male sterility domain containing 2 mm
MOUSE430_2:1426370_AT male sterility domain containing 2 mm
MOE430A:1426369_AT male sterility domain containing 2 mm
MOUSE430A_2:1426369_AT male sterility domain containing 2 mm
MOUSE430_2:1426369_AT male sterility domain containing 2 mm
MOE430A:1426371_AT male sterility domain containing 2 mm
MOUSE430A_2:1426371_AT male sterility domain containing 2 mm
MOUSE430_2:1426371_AT male sterility domain containing 2 mm
MU19KSUBC:TC36362_AT Male sterility domain containing 2 (Mlstd2), mRNA mm
MU19KSUBC:TC41221_AT Male sterility domain containing 2 (Mlstd2), mRNA mm
RAE230B:1382629_AT similar to male sterility domain containing 2 rn
RAT230_2:1382629_AT similar to male sterility domain containing 2 rn
Protein Similarities
Method ID Description E-Value
blast AAC67415 Hypothetical protein Y71H10A.2 [Caenorhabditis elegans] ref|NP_508505.1| Y71H10A.2 [Caenorhabditis elegans] 0.0
blast CAE58814 Hypothetical protein CBG02021 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004262 EMBL-EBI Male sterility protein 1.3E-94
Pfam IPR004262 EMBL-EBI Male sterility protein 1.3E-94
Sequence
Target Sequence 
>C. ELEGANS:186532_AT
tggagcaatgcttcgcagttccatccacatatttccacaaatcacgttcactattcctta
taaactattatatcaagcatcatatacctgctgccatctcagatatttctgctcgtctta
taggaaagcgaaaaaacaatgtgaagctgtattcgaaagtgtggaaaatgattgaaactc
tacactttttcacgactcgcggatggagtttcaatgcacgtggactgccagaattctttg
agaaaatgacacccgcagatcaaaaggagtacaactttgatgttcgccaagtggattgga
actcgtatttattcgattatgtaatgggtatcaagaagttccttttgaaagaaaatctgg
agaatcttaacagatcgagagcacatcttttgaaaatgcgcattcgacgccaagtaattg
cagcaatagtttacgcaggatttatctctacaattggaagaaaatggaagaagactactc
aatatctgacatggttcggtgctatgttggcaacatatacatacactgaagtcagtttca
gacggcatattcctctgaaatcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCAATGCTTCGCAGTTCCATC 475 547 1007 Antisense
CACAAATCACGTTCACTATTCCTTA 150 195 1042 Antisense
CATATACCTGCTGCCATCTCAGATA 406 213 1087 Antisense
CAGATATTTCTGCTCGTCTTATAGG 66 207 1106 Antisense
CACTTTTTCACGACTCGCGGATGGA 401 195 1189 Antisense
GTTTCAATGCACGTGGACTGCCAGA 527 447 1214 Antisense
GGAGTACAACTTTGATGTTCGCCAA 163 517 1272 Antisense
TGCGCATTCGACGCCAAGTAATTGC 202 583 1403 Antisense
GTTTACGCAGGATTTATCTCTACAA 639 449 1435 Antisense
CAATATCTGACATGGTTCGGTGCTA 446 181 1486 Antisense
GACGGCATATTCCTCTGAAATCATT 109 377 1547 Antisense
Sequence Source Affymetrix Proprietary Database