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[186531_at]

Description Y37E11B.7 /REP_DB=WormBase Gene ID /WP=CE19617 /TR=Q9TYN0 /GB=AAD12820.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 53      6grp_total > 54      4grp_total > 49      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 562
1 2 3 4 range
A 143.4
(-2.8)
P 		686.8
(3)
P 		673.5
(2.9)
P 		124.5
(-3)
A 		562
B 170.6
(-3)
A 		510.3
(1.5)
P 		621.8
(3)
P 		196.9
(-2.7)
A 		451
C 193.7
(-3)
P 		564.2
(3)
P 		559.5
(2.9)
P 		213.6
(-2.7)
A 		371
avr 169.2
(-3) 		587.1
(2.6) 		618.3
(3) 		178.3
(-2.9) 		449

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 257.3
(-2.9)
P 		379.6
(-0.3)
P 		535.4
(3)
P 		360.7
(-0.7)
P 		254.4
(-3)
A 		310.6
(-1.8)
P 		281
B 224.9
(-3)
P 		341.5
(-0.8)
P 		537.1
(3)
P 		299.9
(-1.6)
P 		255.7
(-2.4)
P 		341.6
(-0.8)
P 		312
C 240.3
(-3)
P 		379.8
(3)
P 		370.7
(2.6)
P 		346.4
(1.6)
P 		310.4
(0)
M 		355.1
(1.9)
P 		140
avr 240.8
(-3) 		367
(0.2) 		481.1
(3) 		335.7
(-0.6) 		273.5
(-2.2) 		335.8
(-0.6) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 52.2
(-1.7)
P 		149.1
(2)
P 		176.1
(3)
P 		18.2
(-3)
A 		158
B 54.4
(-2.3)
A 		126
(1.9)
P 		144.1
(3)
P 		42
(-3)
A 		102
C 64.1
(-1.9)
P 		162.2
(1.8)
P 		195
(3)
P 		36
(-3)
A 		159
avr 56.9
(-1.9) 		145.8
(1.9) 		171.7
(3) 		32.1
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 47.4
(-3)
P 		135
(3)
P 		116.6
(1.7)
P 		91.5
(0)
P 		76.8
(-1)
A 		75.6
(-1.1)
P 		88
B 78.3
(-3)
P 		113.7
(1.1)
P 		130.4
(3)
P 		79.4
(-2.9)
P 		103.9
(-0.1)
P 		127.4
(2.7)
P 		52
C 89.1
(-0.6)
P 		115.9
(2.6)
P 		94.4
(0)
P 		69.7
(-3)
P 		100.5
(0.8)
M 		118.9
(3)
P 		49
avr 71.6
(-3) 		121.5
(3) 		113.8
(2.1) 		80.2
(-2) 		93.7
(-0.3) 		107.3
(1.3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10611
Sequence Type Exemplar sequence
Representative Public ID Y37E11B.7 NCBI
Target Description Y37E11B.7 /REP_DB=WormBase Gene ID /WP=CE19617 /TR=Q9TYN0 /GB=AAD12820.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067980 NCBI Caenorhabditis elegans Y37E11B.7 (Y37E11B.7) mRNA, complete cds. 11/11 None
SNAP00000044695 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3599602:3600004:-1 10/11 None
GENEFINDER00000044698 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3599602:3600031:-1 11/11 None
Y37E11B.7 ENSEMBL cdna:known chromosome:CEL140:IV:3599518:3600031:-1 gene:Y37E11B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3599607-3600037(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11B.7
Entrez Gene 177121 Entrez gene
SwissProt Q9TYN0 EMBL-EBI
WormBase CE19617 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12820 Hypothetical protein Y37E11B.7 [Caenorhabditis elegans] ref|NP_500381.1| Y37E11B.7 [Caenorhabditis elegans] 1.0E-37
blast AAD12820 Hypothetical protein Y37E11B.7 [Caenorhabditis elegans] ref|NP_500381.1| Y37E11B.7 [Caenorhabditis elegans] 3.0E-36
blast CAE63767 Hypothetical protein CBG08303 [Caenorhabditis briggsae] 1.0E-20
blast CAE63767 Hypothetical protein CBG08303 [Caenorhabditis briggsae] 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:186531_AT
attattgctgcttatgctcattggagaatccgtttctctgactatgctcggattgacacg
tggctcccgagttggcgctgctgacgacgaccctccatatttcccggaagaagacgattt
cccgagagctagaagccgcgtgccgacctacgaacaagctatcgggacagttgctggaaa
agctctcccggcccgtcggtgggaggaattggagccaactcatcggcaaattcttggggc
tccgctgagaagacgccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATTGCTGCTTATGCTCATTGGA 625 13 27 Antisense
AATCCGTTTCTCTGACTATGCTCGG 233 167 53 Antisense
GACTATGCTCGGATTGACACGTGGC 649 371 66 Antisense
GAAGAAGACGATTTCCCGAGAGCTA 216 341 133 Antisense
TTCCCGAGAGCTAGAAGCCGCGTGC 623 695 145 Antisense
CGTGCCGACCTACGAACAAGCTATC 166 245 165 Antisense
ACAAGCTATCGGGACAGTTGCTGGA 472 111 180 Antisense
GGCCCGTCGGTGGGAGGAATTGGAG 687 537 216 Antisense
ATTGGAGCCAACTCATCGGCAAATT 678 1 234 Antisense
ATCGGCAAATTCTTGGGGCTCCGCT 208 35 248 Antisense
TGGGGCTCCGCTGAGAAGACGCCCA 191 553 261 Antisense
Sequence Source Affymetrix Proprietary Database