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[186530_at]

Description Y116F11A.3 /REP_DB=WormBase Gene ID /WP=CE24156 /TR=Q9U3T3 /GB=CAB60761.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.8
(-3)
A 		5.1
(-1.8)
A 		2.6
(-2.7)
A 		18.5
(3)
A 		17
B 2.2
(-2.8)
A 		2.9
(-1.6)
A 		5.6
(3)
A 		2.1
(-3)
A 		4
C 2.3
(-3)
A 		3.1
(-2.1)
A 		2.6
(-2.7)
A 		7.5
(3)
A 		5
avr 2.1
(-3) 		3.7
(-1.7) 		3.6
(-1.8) 		9.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.5
(3)
A 		2.1
(-2.3)
A 		1.9
(-3)
A 		2.5
(-0.8)
A 		2.3
(-1.5)
A 		2.6
(-0.4)
A 		2
B 3.3
(-2.1)
A 		2.4
(-2.6)
A 		3.3
(-2.1)
A 		12
(3)
A 		2.4
(-2.6)
A 		1.8
(-3)
A 		10
C 3.7
(-1)
A 		4.5
(-0.2)
A 		6.3
(1.8)
A 		7.4
(3)
A 		1.9
(-3)
A 		5.4
(0.8)
A 		6
avr 3.5
(-1.5) 		3
(-2.1) 		3.8
(-1.1) 		7.3
(3) 		2.2
(-3) 		3.3
(-1.7) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.7
(-3)
A 		1.1
(-1.8)
A 		0.7
(-3)
A 		2.7
(3)
A 		2
B 0.7
(-1)
A 		0.7
(-1)
A 		1.3
(3)
A 		0.4
(-3)
A 		1
C 0.8
(-3)
A 		0.9
(-1.8)
A 		0.9
(-1.8)
A 		1.3
(3)
A 		1
avr 0.7
(-3) 		0.9
(-1.5) 		1
(-0.8) 		1.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.6
(-0)
A 		0.8
(3)
A 		0.4
(-3)
A 		0.6
(-0)
A 		0.7
(1.5)
A 		0.6
(-0)
A 		0
B 1.1
(-2)
A 		0.8
(-2.8)
A 		0.8
(-2.8)
A 		3.2
(3)
A 		1
(-2.3)
A 		0.7
(-3)
A 		3
C 1.4
(1)
A 		1.4
(1)
A 		1.6
(2)
A 		1.5
(1.5)
A 		0.6
(-3)
A 		1.8
(3)
A 		1
avr 1
(-1.8) 		1
(-1.8) 		0.9
(-2.4) 		1.8
(3) 		0.8
(-3) 		1
(-1.8) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13009
Sequence Type Exemplar sequence
Representative Public ID Y116F11A.3 NCBI
Target Description Y116F11A.3 /REP_DB=WormBase Gene ID /WP=CE24156 /TR=Q9U3T3 /GB=CAB60761.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075418
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000017817 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19727036:19733073:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075418 8/11 Cross Hyb Matching Probes None
SNAP00000017812 8/11 Cross Hyb Matching Probes None
Y116F11A.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19727035-19727588(+) 85.8 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60760 Hypothetical protein Y116F11A.1 [Caenorhabditis elegans] ref|NP_507820.1| Y116F11A.1 [Caenorhabditis elegans] 7.0E-87
blast CAA94112 Hypothetical protein C11G6.2 [Caenorhabditis elegans] ref|NP_510656.1| C11G6.2 [Caenorhabditis elegans] 2.0E-69
blast CAB60761 Hypothetical protein Y116F11A.3 [Caenorhabditis elegans] ref|NP_507819.1| Y116F11A.3 [Caenorhabditis elegans] 4.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017817 1 160-182
Sequence
Target Sequence 
>C. ELEGANS:186530_AT
ttgctagttctgactccattttgctctgccgagtggtacaacaatcaaaccgatgcttgc
aactactgcggacaaatggttttcgggttattgttgcagaatgatgtggagacgttgatt
agcacgaatcgcttggtttcaaaggttagttcgttgagtagagctcgaaattctgagtat
tttgttattttgaaaccccctccccctgcgtctctcctcctcccacactctcttgactac
tttacttcaaacgcgcgtatctctacaacgtacaacttctgcccaaactacgcccccgga
tggcaattagacagttgtgtggcattcctggactacaccttcagtttcttttaccgcatc
tactacgccatcaacttcccgatccgtgactacatctgtgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTAGTTCTGACTCCATTTTGCT 598 701 40 Antisense
TCCATTTTGCTCTGCCGAGTGGTAC 81 591 54 Antisense
ACCGATGCTTGCAACTACTGCGGAC 434 89 88 Antisense
CACTCTCTTGACTACTTTACTTCAA 433 197 265 Antisense
TACTTCAAACGCGCGTATCTCTACA 345 645 282 Antisense
TCTCTACAACGTACAACTTCTGCCC 290 613 299 Antisense
ACTACGCCCCCGGATGGCAATTAGA 457 101 326 Antisense
AGACAGTTGTGTGGCATTCCTGGAC 290 71 348 Antisense
TGGACTACACCTTCAGTTTCTTTTA 628 547 368 Antisense
TCAGTTTCTTTTACCGCATCTACTA 158 623 380 Antisense
CGATCCGTGACTACATCTGTGTTCC 278 249 419 Antisense
Sequence Source Affymetrix Proprietary Database