[Home] | [Total List]

[186528_s_at]

Description F46E10.11 /REP_DB=WormBase Gene ID /WP=CE25890 /TR=Q9UAV9 /GB=AAK71367.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_total > 23      4grp_total > 45      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 889
1 2 3 4 range
A 1279.7
(2)
P 		1433.4
(3)
P 		544.8
(-3)
P 		703
(-1.9)
P 		889
B 1391
(3)
P 		1022.1
(0.2)
P 		609.2
(-3)
P 		733.4
(-2)
P 		782
C 1320.6
(3)
P 		1060.6
(0.9)
P 		583
(-3)
P 		688.3
(-2.1)
P 		738
avr 1330.4
(3) 		1172
(1.7) 		579
(-3) 		708.2
(-2) 		751

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1327
1 2 3 4 5 6 range
A 1482.8
(3)
P 		1110
(1.3)
P 		1082.4
(1.2)
P 		821.6
(0)
P 		425.6
(-1.8)
P 		156.6
(-3)
A 		1326
B 1287.8
(2.5)
P 		1101.5
(1.6)
P 		1390.6
(3)
P 		726
(-0.2)
P 		503.7
(-1.3)
P 		155.5
(-3)
A 		1235
C 1234.7
(3)
P 		1096.9
(2.2)
P 		977.5
(1.5)
P 		846.4
(0.8)
P 		517.2
(-1.1)
P 		180.7
(-3)
A 		1054
avr 1335.1
(3) 		1102.8
(1.8) 		1150.2
(2.1) 		798
(0.2) 		482.2
(-1.4) 		164.3
(-3) 		1171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 465.9
(3)
P 		311.1
(0.4)
P 		142.4
(-2.3)
P 		102.9
(-3)
P 		363
B 443.6
(3)
P 		252.4
(-0.8)
P 		141.2
(-3)
P 		156.3
(-2.7)
P 		302
C 437.1
(3)
P 		304.9
(0.5)
P 		203.2
(-1.4)
P 		116.1
(-3)
P 		321
avr 448.9
(3) 		289.5
(0) 		162.3
(-2.3) 		125.1
(-3) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 273.3
(1)
P 		394.8
(3)
P 		235.7
(0.3)
P 		208.4
(-0.1)
P 		128.4
(-1.5)
P 		38.1
(-3)
A 		357
B 448.1
(3)
P 		366.6
(1.7)
P 		337.7
(1.3)
P 		192.3
(-0.9)
P 		204.7
(-0.7)
P 		58
(-3)
A 		390
C 457.6
(3)
P 		334.7
(1.1)
P 		248.8
(-0.2)
P 		170.2
(-1.3)
P 		167.3
(-1.4)
P 		60.5
(-3)
A 		397
avr 393
(3) 		365.4
(2.5) 		274.1
(0.9) 		190.3
(-0.6) 		166.8
(-1) 		52.2
(-3) 		341
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186528_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12086
Sequence Type Exemplar sequence
Representative Public ID F46E10.11 NCBI
Target Description F46E10.11 /REP_DB=WormBase Gene ID /WP=CE25890 /TR=Q9UAV9 /GB=AAK71367.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072259(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072259 NCBI Caenorhabditis elegans F46E10.11 (F46E10.11) mRNA, complete cds. 11/11 None
SNAP00000002136 ENSEMBL cdna:SNAP chromosome:CEL140:V:6534682:6535647:-1 11/11 None
GENEFINDER00000002141 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6534765:6535647:-1 9/11 None
F46E10.11 ENSEMBL cdna:known chromosome:CEL140:V:6534672:6535664:-1 gene:F46E10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6534681-6535647(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46E10.11
Entrez Gene 179044 Entrez gene
SwissProt Q9UAV9 EMBL-EBI
WormBase CE25890 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71367 Hypothetical protein F46E10.11 [Caenorhabditis elegans] ref|NP_504660.1| F46E10.11 [Caenorhabditis elegans] 6.0E-94
blast T33970 hypothetical protein F46E10.11 - Caenorhabditis elegans 9.0E-83
blast CAE71902 Hypothetical protein CBG18960 [Caenorhabditis briggsae] 2.0E-82
blast AAK71367 Hypothetical protein F46E10.11 [Caenorhabditis elegans] ref|NP_504660.1| F46E10.11 [Caenorhabditis elegans] 4.0E-75
blast T33970 hypothetical protein F46E10.11 - Caenorhabditis elegans 5.0E-75
Sequence
Target Sequence 
>C. ELEGANS:186528_S_AT
ggcaattctttttgtcctaattccacttatctctgctaatatgagagatactgcgagcgt
tagccaagagagcacagaagttgctcgtcctcgaccgaagcgacagatttattatttatg
cggaaattttccaaatcaatatctcagcttaacaccatgcaactctggctgcagtacctg
caactgtaacacagccacatgcagcacttcaagctactgccagcagattcgcagtaattg
gagatgtatcaacggttgctgtagagtgccgaactatgagccaactcttccaccgactac
cacaagatctccagtgaacccgaatccagtttgtggaggacgcgaaacgtctggtggata
ctgtagatctggaaacgtttgtggttccggatacatgtgcaatgataacaatgtgtgctg
tagatgttcgtatggtacgtcgattggtccatgtgtgaatggtcaatgtcccgacaatac
ctactgttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAATTCTTTTTGTCCTAATTCCA 273 533 21 Antisense
CTAATTCCACTTATCTCTGCTAATA 334 227 37 Antisense
GAGATACTGCGAGCGTTAGCCAAGA 216 397 65 Antisense
TCGTCCTCGACCGAAGCGACAGATT 34 605 105 Antisense
AACTCTGGCTGCAGTACCTGCAACT 271 137 181 Antisense
GCAGCACTTCAAGCTACTGCCAGCA 442 313 221 Antisense
AGTGCCGAACTATGAGCCAACTCTT 369 59 285 Antisense
CAAGATCTCCAGTGAACCCGAATCC 437 183 323 Antisense
GTGGTTCCGGATACATGTGCAATGA 460 489 401 Antisense
GGTACGTCGATTGGTCCATGTGTGA 327 505 454 Antisense
TGTCCCGACAATACCTACTGTTCGC 511 557 487 Antisense
Sequence Source Affymetrix Proprietary Database