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[186527_at]

Description F43C11.10 /REP_DB=WormBase Gene ID /WP=CE23717 /TR=Q9U5B6 /GB=AAF16620.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 6.7
(-2.5)
A 		8.5
(-2.3)
A 		2.5
(-3)
A 		52.3
(3)
A 		50
B 7.2
(-1.8)
A 		6.3
(-2.1)
A 		21.6
(3)
A 		3.6
(-3)
A 		18
C 8.6
(3)
A 		6.1
(0.2)
A 		3.3
(-3)
A 		7.2
(1.4)
A 		5
avr 7.5
(-2.8) 		7
(-3) 		9.1
(-2.1) 		21
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.5
(-1.9)
A 		2.4
(-2.1)
A 		5.2
(3)
A 		1.9
(-3)
A 		3.8
(0.5)
A 		3.2
(-0.6)
A 		3
B 2.3
(-2.8)
A 		2
(-2.8)
A 		31.3
(3)
A 		6.4
(-2)
A 		1.2
(-3)
A 		2.3
(-2.8)
A 		30
C 22.5
(3)
A 		1.9
(-2.9)
A 		5.7
(-1.8)
A 		4.5
(-2.1)
A 		2.3
(-2.7)
A 		1.4
(-3)
A 		21
avr 9.1
(0.5) 		2.1
(-3) 		14.1
(3) 		4.3
(-1.9) 		2.4
(-2.9) 		2.3
(-2.9) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.4
(-1.5)
A 		1.9
(-1.9)
A 		0.6
(-3)
A 		7.6
(3)
A 		7
B 2.3
(-0.9)
A 		1.6
(-1.9)
A 		5
(3)
A 		0.8
(-3)
A 		4
C 2.8
(3)
A 		1.8
(-0.8)
A 		1.2
(-3)
A 		1.2
(-3)
A 		2
avr 2.5
(-0) 		1.8
(-3) 		2.3
(-0.9) 		3.2
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.8
(-0.4)
A 		1.1
(2.1)
A 		0.5
(-3)
A 		1.2
(3)
A 		0.8
(-0.4)
A 		1
B 0.8
(-2.7)
A 		0.7
(-2.8)
A 		7.6
(3)
A 		1.7
(-2)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		7
C 8.3
(3)
A 		0.6
(-2.9)
A 		1.5
(-2.2)
A 		0.9
(-2.7)
A 		0.7
(-2.8)
A 		0.5
(-3)
A 		8
avr 3.2
(2.6) 		0.7
(-3) 		3.4
(3) 		1
(-2.3) 		0.8
(-2.8) 		0.7
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5040
Sequence Type Exemplar sequence
Representative Public ID F43C11.10 NCBI
Target Description F43C11.10 /REP_DB=WormBase Gene ID /WP=CE23717 /TR=Q9U5B6 /GB=AAF16620.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061849(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061849 NCBI Caenorhabditis elegans F43C11.10 (F43C11.10) mRNA, complete cds. 9/11 None
SNAP00000012997 ENSEMBL cdna:SNAP chromosome:CEL140:II:2347453:2351685:-1 10/11 None
F43C11.10 ENSEMBL cdna:known chromosome:CEL140:II:2350262:2351658:-1 gene:F43C11.10 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2350231-2351684(-) 89.95 100.0
Public Domain and Genome References
Gene Title
Ensembl F43C11.10
Entrez Gene 185701 Entrez gene
SwissProt Q9U5B6 EMBL-EBI
WormBase CE35930 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF16620 Hypothetical protein F43C11.10 [Caenorhabditis elegans] ref|NP_494250.3| F43C11.10 [Caenorhabditis elegans] 2.0E-42
blast AAF16620 Hypothetical protein F43C11.10 [Caenorhabditis elegans] ref|NP_494250.3| F43C11.10 [Caenorhabditis elegans] 4.0E-16
Sequence
Target Sequence 
>C. ELEGANS:186527_AT
atggccaatcctcaaattccacaggtattcaaaatgaaaaataaactggagaagccaaag
gctattagcaaagaagaacgagatctggaatcactaatgctaattttgaagagatccata
tacaatttgtacggaaagaagaacatttttttggtcgacttccaaaattatgagtgttcc
ttccgggcagactctataagcaacatcagatcggaatctcaaaaagttggagctggaacc
ggctcggagcaagcagtgaatatcgaatcggatgaccaaatcagcgatatttccgttgtt
agtcaagatggtgacagctccgttggaagtgacgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCAATCCTCAAATTCCACAGG 664 51 13 Antisense
ACGAGATCTGGAATCACTAATGCTA 610 93 90 Antisense
CAAAATTATGAGTGTTCCTTCCGGG 89 191 175 Antisense
TCCTTCCGGGCAGACTCTATAAGCA 341 591 190 Antisense
ATAAGCAACATCAGATCGGAATCTC 420 23 208 Antisense
AAGTTGGAGCTGGAACCGGCTCGGA 198 107 236 Antisense
ACCGGCTCGGAGCAAGCAGTGAATA 258 89 250 Antisense
ATCGAATCGGATGACCAAATCAGCG 236 35 274 Antisense
TCAGCGATATTTCCGTTGTTAGTCA 445 621 293 Antisense
TCAAGATGGTGACAGCTCCGTTGGA 562 631 315 Antisense
GACAGCTCCGTTGGAAGTGACGTGG 98 369 325 Antisense
Sequence Source Affymetrix Proprietary Database