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[186526_at]

Description Y59E9AL.1 /REP_DB=WormBase Gene ID /WP=CE24515 /TR=Q9N327 /GB=AAF60822.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 20      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 31.4
(-2)
A 		60.7
(1)
A 		21.6
(-3)
A 		80.6
(3)
A 		59
B 55.6
(1)
A 		31.9
(-3)
A 		38.1
(-1.9)
A 		67.2
(3)
A 		35
C 54.9
(-0.7)
M 		39.1
(-1.6)
A 		14.1
(-3)
A 		121.5
(3)
M 		107
avr 47.3
(-0.9) 		43.9
(-1.2) 		24.6
(-3) 		89.8
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 54.6
(3)
A 		34.6
(0.6)
A 		43.6
(1.7)
P 		13.4
(-2)
A 		37.4
(0.9)
A 		5.1
(-3)
A 		50
B 28
(-0.3)
A 		42.8
(3)
A 		36.5
(1.6)
A 		16
(-3)
A 		38
(1.9)
P 		17.6
(-2.6)
A 		27
C 36
(-1.5)
A 		94.7
(3)
A 		42.5
(-1)
A 		54.3
(-0.1)
A 		16.2
(-3)
A 		27.3
(-2.2)
A 		79
avr 39.5
(0.4) 		57.4
(3) 		40.9
(0.6) 		27.9
(-1.3) 		30.5
(-1) 		16.7
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.4
(1.6)
A 		13.2
(3)
A 		5.6
(-3)
A 		11.8
(1.9)
A 		8
B 17.7
(3)
A 		7.9
(-3)
A 		8.8
(-2.4)
A 		14.3
(0.9)
A 		10
C 18.2
(2.1)
M 		11.2
(-0.6)
A 		4.9
(-3)
A 		20.5
(3)
M 		16
avr 15.8
(3) 		10.8
(-0.2) 		6.4
(-3) 		15.5
(2.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.1
(1.8)
A 		12.3
(3)
A 		9.5
(1.5)
P 		3.4
(-1.8)
A 		11.3
(2.5)
A 		1.2
(-3)
A 		11
B 9.7
(-0.1)
A 		14.2
(2.4)
A 		8.9
(-0.5)
A 		4.2
(-3)
A 		15.4
(3)
P 		6.6
(-1.7)
A 		11
C 13.3
(-0.9)
A 		28.9
(3)
A 		10.8
(-1.6)
A 		10.9
(-1.6)
A 		5.2
(-3)
A 		9.1
(-2)
A 		24
avr 11
(-0.5) 		18.5
(3) 		9.7
(-1.1) 		6.2
(-2.7) 		10.6
(-0.7) 		5.6
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11214
Sequence Type Exemplar sequence
Representative Public ID Y59E9AL.1 NCBI
Target Description Y59E9AL.1 /REP_DB=WormBase Gene ID /WP=CE24515 /TR=Q9N327 /GB=AAF60822.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068346 NCBI Caenorhabditis elegans THaumatiN family member (thn-6) (thn-6) mRNA, complete cds. 11/11 None
SNAP00000011362 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5228908:5230072:1 11/11 None
GENEFINDER00000011364 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5228908:5230088:1 11/11 None
Y59E9AL.1 ENSEMBL cdna:known chromosome:CEL140:IV:5228908:5230072:1 gene:Y59E9AL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5228913-5230078(+) 99.86 100.0
Public Domain and Genome References
Gene Title
Gene Symbol thn-6
Ensembl Y59E9AL.1
Entrez Gene 190415 Entrez gene
SwissProt Q9N327 EMBL-EBI
WormBase CE24515 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60822 Thaumatin family protein 6 [Caenorhabditis elegans] ref|NP_500747.1| THaumatiN family member (thn-6) [Caenorhabditis elegans] 1.0E-117
blast CAE72820 Hypothetical protein CBG20101 [Caenorhabditis briggsae] 3.0E-97
blast AAF60832 Thaumatin family protein 5 [Caenorhabditis elegans] ref|NP_500748.2| THaumatiN family member (thn-5) [Caenorhabditis elegans] 1.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 1.1E-74
Pfam IPR001938 EMBL-EBI Thaumatin, pathogenesis-related 1.8E-76
Sequence
Target Sequence 
>C. ELEGANS:186526_AT
tggccaggaattgtgggtcccgggaaccctgaaggtggcggcttccgattgggaaacgag
caaaatcgaataatttctgtggaagatggctgggaaggtgtaatttggggaaggacgttg
tgtgattctcgaatgagatgtgcaactggaacttgtgggaaccgtgaacaatgcaatgga
acaatcggtagattcccattcaccgttgctgaattcagtttgaatgaatcaaatgatgaa
gacgtgtattcagtttccctgatcaatggatacaatgtaccaattttgattgatccattt
gggggccaaggatgtcgtcgtgctggtggatgcgtttctgatataaacgatttctgtcca
gagagaatgagaattacatcaaatcgtagaagcgttaataacaatgtagtcggttgtaga
tcaccatgtgatgctttgagatctgatagagaatgttgccgtggaaactttgaaactccg
gataaatgcttcagaagtcatgtggctcaaacatttaaagatgcttgtccaagtgcttac
tcatttctttttgacgatgcgacatcttcattcggttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCCAGGAATTGTGGGTCCCGGGA 294 543 103 Antisense
GTGGCGGCTTCCGATTGGGAAACGA 214 489 137 Antisense
AAGGACGTTGTGTGATTCTCGAATG 377 161 213 Antisense
TCGGTAGATTCCCATTCACCGTTGC 650 603 287 Antisense
GAAGACGTGTATTCAGTTTCCCTGA 431 339 340 Antisense
GCCAAGGATGTCGTCGTGCTGGTGG 40 279 407 Antisense
TCGTGCTGGTGGATGCGTTTCTGAT 133 605 420 Antisense
GCTTCAGAAGTCATGTGGCTCAAAC 304 305 590 Antisense
GCTTGTCCAAGTGCTTACTCATTTC 61 307 625 Antisense
ACTCATTTCTTTTTGACGATGCGAC 142 99 641 Antisense
ACGATGCGACATCTTCATTCGGTTG 533 93 656 Antisense
Sequence Source Affymetrix Proprietary Database