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[186524_at]

Description Y54G11A.12 /REP_DB=WormBase Gene ID /WP=CE22484 /TR=Q9XVZ3 /GB=CAA22460.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 19      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 33.1
(-0.9)
A 		44.9
(-0.1)
A 		2.4
(-3)
A 		89.4
(3)
A 		87
B 9.2
(-3)
A 		47.5
(-0.2)
A 		15
(-2.6)
A 		90.9
(3)
A 		82
C 49.8
(-0.3)
A 		24.6
(-2.4)
A 		17.4
(-3)
A 		88.3
(3)
A 		71
avr 30.7
(-1.5) 		39
(-0.9) 		11.6
(-3) 		89.5
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 62
(3)
A 		21
(-1.3)
A 		55.3
(2.3)
A 		4.5
(-3)
A 		49.5
(1.7)
A 		42.3
(0.9)
A 		58
B 30.8
(-1.2)
A 		65.1
(3)
M 		34
(-0.8)
A 		41.6
(0.1)
A 		16.4
(-3)
A 		30.7
(-1.2)
A 		49
C 24.6
(-0.7)
A 		58.2
(3)
A 		4.9
(-2.8)
A 		45.1
(1.6)
A 		49.7
(2.1)
A 		3.2
(-3)
A 		55
avr 39.1
(0.6) 		48.1
(3) 		31.4
(-1.4) 		30.4
(-1.7) 		38.5
(0.5) 		25.4
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.1
(2.5)
A 		9.8
(1.4)
A 		0.6
(-3)
A 		13.1
(3)
A 		13
B 2.9
(-3)
A 		11.7
(0.2)
A 		3.5
(-2.8)
A 		19.4
(3)
A 		17
C 16.5
(3)
A 		7.1
(-2.4)
A 		6
(-3)
A 		14.9
(2.1)
A 		11
avr 10.5
(0.4) 		9.5
(-0) 		3.4
(-3) 		15.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.4
(1.5)
A 		7.5
(-0.2)
A 		12
(1.7)
A 		1.1
(-3)
A 		14.9
(3)
A 		10.3
(1)
A 		14
B 10.7
(-1.4)
A 		21.7
(3)
M 		8.3
(-2.4)
A 		11
(-1.3)
A 		6.7
(-3)
A 		11.4
(-1.1)
A 		15
C 9.1
(-0.1)
A 		17.8
(3)
A 		1.2
(-3)
A 		9.1
(-0.1)
A 		16.1
(2.4)
A 		1.1
(-3)
A 		17
avr 10.4
(-0.7) 		15.7
(3) 		7.2
(-2.9) 		7.1
(-3) 		12.6
(0.8) 		7.6
(-2.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4011
Sequence Type Exemplar sequence
Representative Public ID Y54G11A.12 NCBI
Target Description Y54G11A.12 /REP_DB=WormBase Gene ID /WP=CE22484 /TR=Q9XVZ3 /GB=CAA22460.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064573
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000023695 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14284613:14286419:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064573 8/11 Cross Hyb Matching Probes None
SNAP00000023644 7/11 Cross Hyb Matching Probes None
Y54G11A.12 8/11 Cross Hyb Matching Probes None
Y54G11A.16 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14285304-14287264(-) 91.07 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22460 Hypothetical protein Y54G11A.12 [Caenorhabditis elegans] ref|NP_496974.2| Serpentine Receptor, class H family member (srh-41) [Caenorhabditis elegans] 1.0E-134
blast CAE11311 Hypothetical protein Y54G11A.15 [Caenorhabditis elegans] ref|NP_001022472.1| Serpentine Receptor, class H family member (srh-42) [Caenorhabditis elegans] 4.0E-93
blast CAE73372 Hypothetical protein CBG20810 [Caenorhabditis briggsae] 9.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023695 4 33-52,91-113,134-156,171-192
Sequence
Target Sequence 
>C. ELEGANS:186524_AT
aacccgtcaatgtcatccggaactcggaaaatgcttagaaacttttttatctccatgtgt
gttcaagtgactattccaattgttgtattgcttcttccgaatctatattggaacatttca
atttcctttgactattactcccaggaactgaataatataagcattattctattcaccctt
catggtacatcgtcttcaatcgcagttatttttatctacaagccatatagagtttacaca
aagaagttaattttttataaaattctaaagctgccggagccaaggcctgtgaccattgta
gcgagtgtatccgatagaagtggtgggagaacggcgccggcgcgccgttcgccggcggga
atcggaaagtttggaaattttcggcaatcggcaaattcagcaactgcccgttttggaaat
ttccggcaattcgcgatttcgacaaagctccggctcagtgagcagcaggatgtgatctac
gagaagtttcgcgctctcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCCGTCAATGTCATCCGGAACTC 568 145 706 Antisense
GAAACTTTTTTATCTCCATGTGTGT 16 357 743 Antisense
ATTGTTGTATTGCTTCTTCCGAATC 252 5 784 Antisense
CAATTTCCTTTGACTATTACTCCCA 575 179 824 Antisense
TAAGCATTATTCTATTCACCCTTCA 568 637 863 Antisense
TTCACCCTTCATGGTACATCGTCTT 336 685 877 Antisense
ACATCGTCTTCAATCGCAGTTATTT 708 105 892 Antisense
AGCCAAGGCCTGTGACCATTGTAGC 50 85 983 Antisense
ATTCAGCAACTGCCCGTTTTGGAAA 659 11 1100 Antisense
ATTTCCGGCAATTCGCGATTTCGAC 446 17 1124 Antisense
CTACGAGAAGTTTCGCGCTCTCTTC 6 227 1182 Antisense
Sequence Source Affymetrix Proprietary Database