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[186523_s_at]

Description F15E11.11 /REP_DB=WormBase Gene ID /WP=CE17008 /TR=O44603 /GB=AAB94207.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 20.5
(-2.5)
A 		22.8
(-2.3)
A 		15.1
(-3)
A 		77.3
(3)
A 		62
B 30
(-3)
A 		31.8
(-2.5)
A 		32.2
(-2.4)
A 		52.4
(3)
A 		22
C 36.7
(-1.3)
A 		32.1
(-1.6)
A 		15.8
(-3)
A 		88
(3)
P 		72
avr 29.1
(-2.1) 		28.9
(-2.1) 		21
(-3) 		72.6
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 14.1
(-1.6)
A 		5.6
(-2.5)
A 		23.1
(-0.7)
A 		58.3
(3)
A 		40.5
(1.1)
A 		1.1
(-3)
A 		57
B 15
(-2.4)
A 		28.6
(-1)
A 		67.8
(3)
A 		26.3
(-1.2)
A 		8.9
(-3)
A 		17.8
(-2.1)
A 		59
C 26.2
(2)
A 		19.7
(-0.2)
A 		21.7
(0.5)
A 		18.4
(-0.6)
A 		29.1
(3)
A 		11.3
(-3)
A 		18
avr 18.4
(-1.2) 		18
(-1.3) 		37.5
(3) 		34.3
(2.3) 		26.2
(0.5) 		10.1
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.5
(-0.1)
A 		4.9
(-2.2)
A 		3.9
(-3)
A 		11.3
(3)
A 		7
B 9.6
(0.4)
A 		7.9
(-2.4)
A 		7.5
(-3)
A 		11.2
(3)
A 		4
C 12.1
(1.3)
A 		9.2
(-0.6)
A 		5.5
(-3)
A 		14.8
(3)
P 		9
avr 9.7
(0.6) 		7.3
(-1.5) 		5.6
(-3) 		12.4
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.6
(-2)
A 		2
(-2.3)
A 		5
(-1.1)
A 		14.8
(3)
A 		12.2
(1.9)
A 		0.3
(-3)
A 		15
B 5.2
(-2.3)
A 		9.5
(-0.3)
A 		16.5
(3)
A 		7
(-1.4)
A 		3.6
(-3)
A 		6.6
(-1.6)
A 		13
C 9.7
(3)
A 		6
(-0.7)
A 		5.5
(-1.2)
A 		3.7
(-3)
A 		9.4
(2.7)
A 		3.8
(-2.9)
A 		6
avr 5.8
(-0.6) 		5.8
(-0.6) 		9
(3) 		8.5
(2.4) 		8.4
(2.3) 		3.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186523_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15606
Sequence Type Exemplar sequence
Representative Public ID F15E11.11 NCBI
Target Description F15E11.11 /REP_DB=WormBase Gene ID /WP=CE17008 /TR=O44603 /GB=AAB94207.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071242(11), NM_071241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071242 NCBI Caenorhabditis elegans F15E11.2 (F15E11.2) mRNA, complete cds. 11/11 None
NM_071241 NCBI Caenorhabditis elegans F15E11.11 (F15E11.11) mRNA, complete cds. 11/11 None
GENEFINDER00000041504 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2330257:2333898:1 11/11 None
GENEFINDER00000041513 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2334357:2336079:-1 11/11 None
F15E11.11 ENSEMBL cdna:known chromosome:CEL140:V:2331744:2333514:1 gene:F15E11.11 11/11 None
F15E11.2 ENSEMBL cdna:known chromosome:CEL140:V:2334741:2336079:-1 gene:F15E11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041498 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2331743-2333514(+) 100.0 100.0
chrV:2334740-2335720(-) 61.08 61.08
Public Domain and Genome References
Gene Title

Ensembl F15E11.11
F15E11.2
Entrez Gene 184537 Entrez gene
184543 Entrez gene
SwissProt O44603 EMBL-EBI
O44602 EMBL-EBI
WormBase CE17008 Wormbase
CE17000 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503642 F15E11.11 [Caenorhabditis elegans] gb|AAB94207.1| Hypothetical protein F15E11.11 [Caenorhabditis elegans] 0.0
blast NP_503642 F15E11.11 [Caenorhabditis elegans] gb|AAB94207.1| Hypothetical protein F15E11.11 [Caenorhabditis elegans] 1.0E-179
blast NP_503643 F15E11.2 [Caenorhabditis elegans] gb|AAB94199.1| Hypothetical protein F15E11.2 [Caenorhabditis elegans] 1.0E-174
blast NP_503643 F15E11.2 [Caenorhabditis elegans] gb|AAB94199.1| Hypothetical protein F15E11.2 [Caenorhabditis elegans] 1.0E-172
blast NP_503642 F15E11.11 [Caenorhabditis elegans] gb|AAB94207.1| Hypothetical protein F15E11.11 [Caenorhabditis elegans] 1.0E-112
blast NP_503643 F15E11.2 [Caenorhabditis elegans] gb|AAB94199.1| Hypothetical protein F15E11.2 [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.2E-15
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.9E-9
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.3E-15
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.8E-22
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 2.1E-22
Sequence
Target Sequence 
>C. ELEGANS:186523_S_AT
gcagacagacttcacaagcggaaagtttttagctggtttggaaacgatagagtgtggcgg
agaaaatagagttcgaagaaacacagactatatatcagtgtcgcagttcagatggattta
taatgacgaaatgctcgaattaggactcaccaacttgacaacaattggatgtcgcaattt
tgaaatttctagtggaagtttaactaatttgaatgtcccaaatttaaagaacattagcta
ttcattgccaactgaaggtaaaatttctgttactctaagaattcaaaatgatgatttctg
tttgacaagcggcgagttgctatcaattattgaaaccagtgttttggaatttcaagaacc
caaaggaaaatactgtgaacccgcaagtgctgtggaaaacggaaaagtctgtaattccac
gtcactaactgatggatgtactcaaatatttggaagcttggtaatcggacctgacaatga
acaattcgtgagccacctcaagaaagtggaagtgatatttggagggcttgttgttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGACAGACTTCACAAGCGGAAAG 176 313 402 Antisense
ACAGACTATATATCAGTGTCGCAGT 53 109 484 Antisense
AGTGTCGCAGTTCAGATGGATTTAT 508 59 498 Antisense
GAAATGCTCGAATTAGGACTCACCA 14 363 529 Antisense
AGGACTCACCAACTTGACAACAATT 268 53 543 Antisense
AACATTAGCTATTCATTGCCAACTG 587 137 631 Antisense
GATGATTTCTGTTTGACAAGCGGCG 679 409 691 Antisense
GACAAGCGGCGAGTTGCTATCAATT 363 365 705 Antisense
AATACTGTGAACCCGCAAGTGCTGT 195 173 770 Antisense
AACAATTCGTGAGCCACCTCAAGAA 206 135 881 Antisense
GATATTTGGAGGGCTTGTTGTTAAT 336 427 915 Antisense
Sequence Source Affymetrix Proprietary Database