[Home] | [Total List]

[186521_at]

Description F21C10.10 /REP_DB=WormBase Gene ID /WP=CE07125 /TR=Q19660 /GB=AAA97970.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 83      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 39      6grp_total > 74      4grp_total > 03      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5671
1 2 3 4 range
A 2194.7
(-2.2)
P 		2109.6
(-2.3)
P 		1467.6
(-3)
P 		7132.7
(3)
P 		5665
B 2428
(-2)
P 		2111.8
(-2.4)
P 		1617
(-3)
P 		6390
(3)
P 		4773
C 2397.2
(-1.9)
P 		1808.5
(-2.6)
P 		1461.9
(-3)
P 		6726.1
(3)
P 		5264
avr 2340
(-2.1) 		2010
(-2.4) 		1515.5
(-3) 		6749.6
(3) 		5234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8694
1 2 3 4 5 6 range
A 4041.4
(-3)
P 		5696.3
(-1.6)
P 		9696.5
(1.8)
P 		11146.4
(3)
P 		10887.7
(2.8)
P 		10420.2
(2.4)
P 		7105
B 3576
(-3)
P 		6068.7
(-0.9)
P 		8276.1
(1)
P 		10593
(3)
P 		9828
(2.3)
P 		10346.5
(2.8)
P 		7017
C 2854
(-3)
P 		6147.6
(-0.7)
P 		8730.7
(1.1)
P 		11547.5
(3)
P 		8647.7
(1)
P 		10009.7
(1.9)
P 		8694
avr 3490.5
(-3) 		5970.9
(-1) 		8901.1
(1.3) 		11095.6
(3) 		9787.8
(2) 		10258.8
(2.3) 		7605
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 987
1 2 3 4 range
A 799.1
(0.8)
P 		457.9
(-2.3)
P 		383.7
(-3)
P 		1044.1
(3)
P 		660
B 774.3
(-0.6)
P 		521.6
(-2.1)
P 		374.7
(-3)
P 		1361.7
(3)
P 		987
C 793.5
(-0.3)
P 		519.9
(-2.9)
P 		509.5
(-3)
P 		1134.1
(3)
P 		625
avr 789
(-0.1) 		499.8
(-2.4) 		422.6
(-3) 		1180
(3) 		757

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3248
1 2 3 4 5 6 range
A 745
(-3)
P 		2025.9
(0)
P 		2111.7
(0.2)
P 		2827
(1.9)
P 		3285.4
(3)
P 		2537
(1.2)
P 		2540
B 1244.3
(-3)
P 		2020
(-1.3)
P 		2009.7
(-1.3)
P 		2805.7
(0.4)
P 		3993
(3)
P 		3858.2
(2.7)
P 		2749
C 1057.9
(-3)
P 		1875.8
(-0.9)
P 		2222.1
(0)
P 		2322.2
(0.3)
P 		2798.3
(1.6)
P 		3350.8
(3)
P 		2293
avr 1015.7
(-3) 		1973.9
(-0.5) 		2114.5
(-0.2) 		2651.6
(1.2) 		3358.9
(3) 		3248.7
(2.7) 		2343
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186521_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11549
Sequence Type Exemplar sequence
Representative Public ID F21C10.10 NCBI
Target Description F21C10.10 /REP_DB=WormBase Gene ID /WP=CE07125 /TR=Q19660 /GB=AAA97970.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072958 NCBI Caenorhabditis elegans F21C10.10 (F21C10.10) mRNA, complete cds. 11/11 None
SNAP00000042372 ENSEMBL cdna:SNAP chromosome:CEL140:V:9098857:9099715:1 11/11 None
GENEFINDER00000042387 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9098857:9099715:1 11/11 None
F21C10.10.1 ENSEMBL cdna:known chromosome:CEL140:V:9098594:9099846:1 gene:F21C10.10 11/11 None
F21C10.10.3 ENSEMBL cdna:known chromosome:CEL140:V:9098854:9099811:1 gene:F21C10.10 11/11 None
F21C10.10.2 ENSEMBL cdna:known chromosome:CEL140:V:9098854:9099846:1 gene:F21C10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9098570-9099716(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21C10.10
Entrez Gene 179290 Entrez gene
SwissProt Q19660 EMBL-EBI
WormBase CE30758 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97970 Hypothetical protein F21C10.10 [Caenorhabditis elegans] ref|NP_505359.2| F21C10.10 [Caenorhabditis elegans] 1.0E-113
blast CAE72098 Hypothetical protein CBG19189 [Caenorhabditis briggsae] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:186521_AT
tgccgggagacgtgtctctcttgttgcaccaagtggaaaggtcaatgctctgaaattcga
ttcaagtgtcatcaaggctatcttgcaagaggactctgagaaaaagattccattcgaatt
catcgatgatattagacaacaacaaaaactcgctgacaagaacttcaagaagattaatgt
gacaaccgatatttcgaaaattgaagctgctgatcaaatcatcgatgcatgctctgccga
tgaatcttctctcttcattaataccgctaaagctgttccaaatgccacaatcatctccct
caacggtgaaaaatctccaattcactcgaatcacgtgtctgtcaaaatgtacagccccat
tcatgagacaaagactgcaaagatgttcaccaattcgaaggtttccaaaaaaactctcga
agaagtaaaccaacttctcgattcgatgggccttactgttctcagtgaggaagattctcg
agttgctgatcgtcttgtacttgatatgcaacaagttgagaaatcatcatctctttcgaa
gcttatttctacacttgtcacaccact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGGGAGACGTGTCTCTCTTGTT 49 587 315 Antisense
AAATCATCGATGCATGCTCTGCCGA 538 117 530 Antisense
CTTCTCTCTTCATTAATACCGCTAA 414 221 560 Antisense
AATCATCTCCCTCAACGGTGAAAAA 350 171 603 Antisense
AATTCACTCGAATCACGTGTCTGTC 527 175 633 Antisense
ATGTACAGCCCCATTCATGAGACAA 519 47 661 Antisense
AGTAAACCAACTTCTCGATTCGATG 358 1 738 Antisense
TCGATTCGATGGGCCTTACTGTTCT 233 603 752 Antisense
GAGTTGCTGATCGTCTTGTACTTGA 18 399 794 Antisense
AATCATCATCTCTTTCGAAGCTTAT 258 171 836 Antisense
TTATTTCTACACTTGTCACACCACT 491 679 857 Antisense
Sequence Source Affymetrix Proprietary Database