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[186519_at]

Description F15E11.12 /REP_DB=WormBase Gene ID /WP=CE25859 /TR=O44596 /GB=AAB94206.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_high_8_8 > 45      6grp_highest_nonorm > 22      6grp_total > 01      4grp_total > 50      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4040
1 2 3 4 range
A 458.4
(-2.3)
P 		3879.6
(3)
P 		2584.1
(1)
P 		27.1
(-3)
A 		3853
B 522
(-2.2)
P 		3681.9
(3)
P 		2894.4
(1.7)
P 		36.9
(-3)
P 		3645
C 511.1
(-2.3)
P 		4054.9
(3)
P 		3163.4
(1.7)
P 		14.5
(-3)
A 		4040
avr 497.2
(-2.3) 		3872.1
(3) 		2880.6
(1.5) 		26.2
(-3) 		3846

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5358
1 2 3 4 5 6 range
A 1804.9
(-0.8)
P 		4731.1
(3)
P 		887.9
(-2)
P 		718
(-2.2)
P 		907.5
(-1.9)
P 		72.8
(-3)
P 		4658
B 1835.8
(-1)
P 		5415
(3)
P 		729.5
(-2.2)
P 		692.3
(-2.3)
P 		977.5
(-2)
P 		57.5
(-3)
P 		5358
C 1722
(-1)
P 		5075.8
(3)
P 		481
(-2.5)
P 		734
(-2.2)
P 		1122.9
(-1.7)
P 		81.2
(-3)
P 		4995
avr 1787.6
(-0.9) 		5074
(3) 		699.5
(-2.2) 		714.8
(-2.2) 		1002.6
(-1.9) 		70.5
(-3) 		5004
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1163
1 2 3 4 range
A 166.9
(-1.8)
P 		842.2
(3)
P 		675.5
(1.8)
P 		4
(-3)
A 		838
B 166.5
(-1.9)
P 		909.3
(3)
P 		670.7
(1.4)
P 		7.9
(-3)
P 		901
C 169.2
(-2.1)
P 		1165.8
(3)
P 		1102.5
(2.7)
P 		2.4
(-3)
A 		1163
avr 167.5
(-2) 		972.4
(3) 		816.2
(2) 		4.8
(-3) 		968

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1785
1 2 3 4 5 6 range
A 332.7
(-1.9)
P 		1682.6
(3)
P 		193.4
(-2.4)
P 		182.1
(-2.4)
P 		273.8
(-2.1)
P 		17.7
(-3)
P 		1665
B 638.8
(-0.9)
P 		1802.4
(3)
P 		177.2
(-2.5)
P 		183.4
(-2.5)
P 		397.2
(-1.7)
P 		21.5
(-3)
P 		1781
C 638.3
(-0.6)
P 		1548.8
(3)
P 		122.4
(-2.6)
P 		147.6
(-2.5)
P 		363.3
(-1.7)
P 		27.2
(-3)
P 		1522
avr 536.6
(-1.1) 		1677.9
(3) 		164.3
(-2.5) 		171
(-2.5) 		344.8
(-1.8) 		22.1
(-3) 		1656
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15267
Sequence Type Exemplar sequence
Representative Public ID F15E11.12 NCBI
Target Description F15E11.12 /REP_DB=WormBase Gene ID /WP=CE25859 /TR=O44596 /GB=AAB94206.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071238
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000041493 ENSEMBL cdna:SNAP chromosome:CEL140:V:2326506:2327035:1 11/11 None
GENEFINDER00000041512 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2326506:2327035:1 11/11 None
F15E11.12 ENSEMBL cdna:known chromosome:CEL140:V:2326507:2327090:1 gene:F15E11.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071238 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2326505-2327035(+) 100.0 100.0
Public Domain and Genome References
Ensembl F15E11.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast F88970 protein F15E11.12 [imported] - Caenorhabditis elegans 8.0E-94
blast CAE63908 Hypothetical protein CBG08479 [Caenorhabditis briggsae] 2.0E-73
blast NP_503639 F15E11.12 [Caenorhabditis elegans] gb|AAB94206.3| Hypothetical protein F15E11.12 [Caenorhabditis elegans] 6.0E-60
blast F88970 protein F15E11.12 [imported] - Caenorhabditis elegans 6.0E-60
blast NP_503639 F15E11.12 [Caenorhabditis elegans] gb|AAB94206.3| Hypothetical protein F15E11.12 [Caenorhabditis elegans] 1.0E-59
blast CAE63908 Hypothetical protein CBG08479 [Caenorhabditis briggsae] 1.0E-47
Sequence
Target Sequence 
>C. ELEGANS:186519_AT
cctcaactaacccgtcgaagtgcaaagattgtactggagaacaaaaccggggaggttttc
cgaatgcaagtgctccatgagtacactggtgagcaaaccgacgactcaggatggtttaat
tttgctccagatgagagccgagtcatgtttgaacatgtctactataacactggattcttc
acgactggggttgacaattggaaggttcatggatcgaaacttgtagagtatgctggaaag
gatggaaagggtatacatatgattggcaaagtgtggattgatggaattccttacaaaagt
tggcatggactactcgccaaatggaagaaacacacgttgagagcagaagatgacggacaa
gtgacaactatccgagtgtatccatcggaagttcaattcatttcgcaaagtggaagatct
gttacaccatggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCAACTAACCCGTCGAAGTGCAA 259 255 37 Antisense
AGGTTTTCCGAATGCAAGTGCTCCA 527 53 89 Antisense
ACACTGGTGAGCAAACCGACGACTC 691 109 119 Antisense
GACTCAGGATGGTTTAATTTTGCTC 95 373 139 Antisense
TGAGAGCCGAGTCATGTTTGAACAT 701 553 168 Antisense
GAACATGTCTACTATAACACTGGAT 514 351 187 Antisense
TAACACTGGATTCTTCACGACTGGG 610 639 201 Antisense
GGCATGGACTACTCGCCAAATGGAA 590 517 338 Antisense
GACAACTATCCGAGTGTATCCATCG 653 363 399 Antisense
ATCGGAAGTTCAATTCATTTCGCAA 74 35 420 Antisense
GTGGAAGATCTGTTACACCATGGTA 429 491 446 Antisense
Sequence Source Affymetrix Proprietary Database