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[186518_s_at]

Description Y116A8C.17 /REP_DB=WormBase Gene ID /WP=CE23326 /TR=Q9U2V4 /GB=CAB55123.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 3.5
(-3)
A 		28.1
(-1.1)
A 		10.4
(-2.5)
A 		79.6
(3)
A 		76
B 43.3
(-1.2)
A 		72
(3)
A 		30.8
(-3)
A 		67.4
(2.3)
A 		41
C 19.5
(-3)
A 		68.8
(3)
A 		57.4
(1.6)
A 		53.1
(1.1)
A 		49
avr 22.1
(-3) 		56.3
(1.6) 		32.9
(-1.5) 		66.7
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 8.5
(-3)
A 		39
(-1.1)
A 		73.9
(1)
P 		36.5
(-1.3)
A 		106.1
(3)
A 		63
(0.4)
A 		98
B 31.7
(-2.7)
A 		41.5
(-1.9)
A 		52.6
(-1)
A 		64.3
(-0)
A 		28.7
(-3)
A 		100.5
(3)
A 		72
C 6.7
(-3)
A 		49.4
(-0.1)
A 		9.4
(-2.8)
A 		27.4
(-1.6)
A 		29.4
(-1.5)
A 		94.9
(3)
A 		88
avr 15.6
(-3) 		43.3
(-0.6) 		45.3
(-0.5) 		42.7
(-0.7) 		54.7
(0.3) 		86.1
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.3
(-3)
A 		6.1
(-0.2)
A 		2.7
(-2.2)
A 		11.7
(3)
A 		10
B 13.8
(0.8)
A 		17.8
(3)
A 		7.1
(-3)
A 		14.4
(1.1)
A 		11
C 6.5
(-3)
A 		19.8
(2.9)
A 		20
(3)
A 		8.9
(-1.9)
A 		14
avr 7.2
(-3) 		14.6
(3) 		9.9
(-0.8) 		11.7
(0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 1.6
(-3)
A 		13.9
(-0.6)
A 		16.1
(-0.1)
P 		9.3
(-1.5)
A 		32
(3)
A 		15.3
(-0.3)
A 		30
B 11
(-3)
A 		13.8
(-2.4)
A 		12.8
(-2.6)
A 		17
(-1.6)
A 		11.6
(-2.9)
A 		37.5
(3)
A 		27
C 2.5
(-3)
A 		15.1
(-0.4)
A 		2.4
(-3)
A 		5.5
(-2.4)
A 		9.5
(-1.6)
A 		31.8
(3)
A 		29
avr 5
(-3) 		14.3
(-0.6) 		10.4
(-1.6) 		10.6
(-1.6) 		17.7
(0.3) 		28.2
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186518_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9811
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.17 NCBI
Target Description Y116A8C.17 /REP_DB=WormBase Gene ID /WP=CE23326 /TR=Q9U2V4 /GB=CAB55123.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070616 NCBI Caenorhabditis elegans Y116A8C.17 (Y116A8C.17) mRNA, complete cds. 11/11 None
SNAP00000004088 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17024457:17025074:-1 11/11 None
GENEFINDER00000004170 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17024457:17025074:-1 11/11 None
Y116A8C.17 ENSEMBL cdna:known chromosome:CEL140:IV:17024457:17025074:-1 gene:Y116A8C.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17024462-17025080(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.17
Entrez Gene 178476 Entrez gene
SwissProt Q9U2V4 EMBL-EBI
WormBase CE23326 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55123 Hypothetical protein Y116A8C.17 [Caenorhabditis elegans] ref|NP_503017.1| Y116A8C.17 [Caenorhabditis elegans] 1.0E-97
blast CAB55126 Hypothetical protein Y116A8C.20 [Caenorhabditis elegans] ref|NP_503020.1| Y116A8C.20 [Caenorhabditis elegans] 2.0E-64
blast CAB05193 Hypothetical protein F38C2.7 [Caenorhabditis elegans] ref|NP_502930.1| F38C2.7 [Caenorhabditis elegans] 9.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 3.0E-10
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 2.3E-13
Sequence
Target Sequence 
>C. ELEGANS:186518_S_AT
tgctccaaatactctgtcaaatctcattctgacatgtgcttttcctgctaattccactca
atcgctttcatcgcaatcatctactggatcttctgaccaacatagtgtcattctccaaga
aaatgaatctgcacacaaattgtcttccgctatcgccaattgtgatccatgcacaatttc
tgatgagcttcgtgaagaaatgatgcgactgaagaagaaggaaaaagcattcaaaacatc
tttgtgtctttcccacaaacgtggtaaaacatgcatttacggtgaagcatgcaaatttgc
tcatggtgtgcatgagctcaggtgtcaacagaccacaagaaaccatcgtaattataaaac
agtcctttgcgataaattcacgacaactggatattgcaagtacggagccaggtgtcaatt
cattcacagatccatggacacaacgcctgcagccaaaccgatggaaactgcggacttcaa
gcctaacgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCAAATACTCTGTCAAATCTC 118 581 60 Antisense
GACATGTGCTTTTCCTGCTAATTCC 516 369 90 Antisense
ACTCAATCGCTTTCATCGCAATCAT 235 101 115 Antisense
GCAATCATCTACTGGATCTTCTGAC 211 323 132 Antisense
CCAACATAGTGTCATTCTCCAAGAA 12 277 156 Antisense
TGCACACAAATTGTCTTCCGCTATC 418 577 189 Antisense
TTCCGCTATCGCCAATTGTGATCCA 239 699 204 Antisense
AAAACATCTTTGTGTCTTTCCCACA 262 129 292 Antisense
ACAGATCCATGGACACAACGCCTGC 672 107 485 Antisense
CGCCTGCAGCCAAACCGATGGAAAC 543 257 503 Antisense
AACTGCGGACTTCAAGCCTAACGTT 481 141 525 Antisense
Sequence Source Affymetrix Proprietary Database