[Home] | [Total List]

[186514_at]

Description Y106G6H.15 /REP_DB=WormBase Gene ID /WP=CE20424 /TR=Q9XWS0 /GB=CAA21578.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 94      6grp_total > 78      4grp_total > 11      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 536
1 2 3 4 range
A 349.1
(-2.2)
P 		338.6
(-2.3)
P 		278.3
(-3)
P 		805.2
(3)
P 		527
B 357.4
(-2.7)
P 		379.5
(-2.5)
P 		336.9
(-3)
P 		813.8
(3)
P 		477
C 424.4
(-1.8)
P 		387.6
(-2.4)
P 		348.5
(-3)
P 		719.7
(3)
P 		371
avr 377
(-2.3) 		368.6
(-2.4) 		321.2
(-3) 		779.6
(3) 		458

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 572
1 2 3 4 5 6 range
A 384
(-3)
P 		420.7
(-2.1)
P 		508.4
(-0)
P 		443.6
(-1.6)
P 		506
(-0.1)
P 		636.7
(3)
P 		253
B 501.8
(-0.9)
P 		385.4
(-2.3)
P 		321.8
(-3)
P 		428.3
(-1.8)
P 		521.3
(-0.7)
P 		837.1
(3)
P 		515
C 438.9
(-2)
P 		427.4
(-2.2)
P 		351.3
(-3)
P 		442.8
(-2)
P 		560.9
(-0.7)
P 		894.1
(3)
P 		543
avr 441.6
(-2.3) 		411.2
(-2.7) 		393.8
(-3) 		438.2
(-2.3) 		529.4
(-0.9) 		789.3
(3) 		396
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 127.1
(3)
P 		73.5
(-2.9)
P 		72.7
(-3)
P 		117.9
(2)
P 		54
B 114
(-0.7)
P 		93.7
(-2)
P 		78.1
(-3)
P 		173.4
(3)
P 		95
C 140.5
(3)
P 		111.4
(-3)
P 		121.5
(-0.9)
P 		121.3
(-1)
P 		29
avr 127.2
(1.7) 		92.9
(-2.7) 		90.8
(-3) 		137.5
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 70.8
(-3)
P 		149.6
(2.6)
P 		110.7
(-0.2)
P 		112.5
(-0)
P 		152.7
(2.8)
P 		155
(3)
P 		84
B 174.6
(-0.5)
P 		128.3
(-1.7)
P 		78.2
(-3)
P 		113.5
(-2.1)
P 		211.8
(0.4)
P 		312.1
(3)
P 		234
C 162.7
(-0.9)
P 		130.4
(-1.8)
P 		89.4
(-3)
P 		89.1
(-3)
P 		181.5
(-0.4)
P 		299.3
(3)
P 		210
avr 136
(-1.4) 		136.1
(-1.4) 		92.8
(-3) 		105
(-2.6) 		182
(0.3) 		255.5
(3) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2367
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.15 NCBI
Target Description Y106G6H.15 /REP_DB=WormBase Gene ID /WP=CE20424 /TR=Q9XWS0 /GB=CAA21578.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060338 NCBI Caenorhabditis elegans Y106G6H.15 (Y106G6H.15) mRNA, complete cds. 11/11 None
SNAP00000001712 ENSEMBL cdna:SNAP chromosome:CEL140:I:10481723:10482557:-1 11/11 None
GENEFINDER00000001721 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10481723:10482557:-1 11/11 None
Y106G6H.15 ENSEMBL cdna:known chromosome:CEL140:I:10481723:10482557:-1 gene:Y106G6H.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10481653-10482488(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6H.15
Entrez Gene 190930 Entrez gene
SwissProt Q9XWS0 EMBL-EBI
WormBase CE20424 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21578 Hypothetical protein Y106G6H.15 [Caenorhabditis elegans] ref|NP_492739.1| Y106G6H.15 [Caenorhabditis elegans] 1.0E-136
blast CAE58950 Hypothetical protein CBG02218 [Caenorhabditis briggsae] 1.0E-69
blast NP_659497 hypothetical protein LOC220134 [Homo sapiens] gb|AAH15706.1| Chromosome 18 open reading frame 24 [Homo sapiens] 5.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR009829 EMBL-EBI Protein of unknown function DUF1395 1.1E-8
Sequence
Target Sequence 
>C. ELEGANS:186514_AT
gttgttactagatgatgcagcttttgatcaacaaaaattggaaaacaactgtgaagaaac
atgtatgaactgcaccaaaagtcaattgaatgattttctcggaatcaaagttgaagcttc
cacgattgtcgatgtgaaatcacaattggtacctcaaagtaaagaatcatctgctcttgt
cgaaaccaatgaaccgaatgaacaaggattatcgtctaaaccgaaagaaaatgatatcag
aattgtgccacagataacggatgaagaattcaaaacaattccaaagtatcaactaggccg
gttaacgctggaaatgatgaatgaaatagtgagcaaaatggatgatttcctgatgaaaaa
gagcaaaatcctggggaaaactaataaacagctgacaaggagcgatagggaggttttgga
caattggcgagaacttgaaatgaaagcaagaaagagacttccaacaacgttattcttcat
agaaaccgacattcgaccaatgctccaagaccgtcttcgtccatcatttgccaaagcaat
tccgtgccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTTACTAGATGATGCAGCTTTT 690 437 135 Antisense
GAAACATGTATGAACTGCACCAAAA 225 357 190 Antisense
AGTTGAAGCTTCCACGATTGTCGAT 153 63 243 Antisense
GTGAAATCACAATTGGTACCTCAAA 152 483 268 Antisense
AATCATCTGCTCTTGTCGAAACCAA 259 171 299 Antisense
TCAACTAGGCCGGTTAACGCTGGAA 601 585 423 Antisense
GGAGCGATAGGGAGGTTTTGGACAA 101 521 533 Antisense
GAGACTTCCAACAACGTTATTCTTC 521 393 588 Antisense
GAAACCGACATTCGACCAATGCTCC 222 357 616 Antisense
GACATTCGACCAATGCTCCAAGACC 374 371 622 Antisense
TTTGCCAAAGCAATTCCGTGCCTTC 489 667 661 Antisense
Sequence Source Affymetrix Proprietary Database