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[186512_at] 7TM chemoreceptor, sri family

Description Y102A5C.32 /REP_DB=WormBase Gene ID /WP=CE20403 /TR=Q9XX83 /GB=CAA20952.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 36      6grp_cgc > 28      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 57.1
(0.5)
A 		86.5
(3)
A 		17.2
(-3)
A 		50.5
(-0.1)
A 		69
B 73.7
(3)
A 		53.8
(-0.1)
A 		35.5
(-3)
A 		60.5
(0.9)
P 		38
C 61.5
(3)
A 		51.3
(1.7)
A 		15.2
(-3)
A 		57.4
(2.5)
A 		46
avr 64.1
(3) 		63.9
(3) 		22.6
(-3) 		56.1
(1.8) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 32.5
(1.2)
A 		14.5
(-1.3)
A 		44.7
(3)
A 		2.9
(-3)
A 		12
(-1.7)
A 		29.5
(0.8)
A 		42
B 25.2
(-3)
A 		28.9
(-1.7)
A 		31.4
(-0.8)
A 		41.9
(3)
A 		35.1
(0.6)
A 		36.5
(1.1)
A 		17
C 25.9
(-0.4)
A 		48.2
(3)
A 		8.7
(-3)
A 		23.4
(-0.8)
A 		31.4
(0.4)
A 		31.9
(0.5)
A 		40
avr 27.9
(0.2) 		30.5
(1.7) 		28.3
(0.4) 		22.7
(-3) 		26.2
(-0.9) 		32.6
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 20.8
(3)
A 		18.8
(2.3)
A 		4.5
(-3)
A 		7.4
(-1.9)
A 		16
B 23.5
(3)
A 		13.3
(-1)
A 		8.2
(-3)
A 		12.9
(-1.2)
P 		15
C 20.3
(3)
A 		14.7
(0.8)
A 		5.3
(-3)
A 		9.7
(-1.2)
A 		15
avr 21.5
(3) 		15.6
(0.7) 		6
(-3) 		10
(-1.5) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6
(0.5)
A 		5.2
(0)
A 		9.7
(3)
A 		0.7
(-3)
A 		3.6
(-1.1)
A 		7.2
(1.3)
A 		9
B 8.8
(-1.9)
A 		9.6
(-1.2)
A 		7.6
(-3)
A 		11.1
(0.1)
A 		14.3
(3)
A 		13.6
(2.4)
A 		7
C 9.6
(0.6)
A 		14.7
(3)
A 		2.2
(-3)
A 		4.7
(-1.8)
A 		10.2
(0.8)
A 		10.7
(1.1)
A 		13
avr 8.1
(0.1) 		9.8
(2.2) 		6.5
(-1.8) 		5.5
(-3) 		9.4
(1.7) 		10.5
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14270
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.32 NCBI
Target Description Y102A5C.32 /REP_DB=WormBase Gene ID /WP=CE20403 /TR=Q9XX83 /GB=CAA20952.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074902 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-69) (sri-69) mRNA, complete cds. 11/11 None
SNAP00000003170 ENSEMBL cdna:SNAP chromosome:CEL140:V:17009905:17010737:-1 11/11 None
GENEFINDER00000003183 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17009810:17010980:-1 11/11 None
Y102A5C.32 ENSEMBL cdna:known chromosome:CEL140:V:17009810:17010980:-1 gene:Y102A5C.32 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17009809-17010980(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-69
Ensembl Y102A5C.32
Entrez Gene 190854 Entrez gene
SwissProt Q9XX83 EMBL-EBI
WormBase CE20403 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20952 Hypothetical protein Y102A5C.32 [Caenorhabditis elegans] ref|NP_507303.1| Serpentine Receptor, class I family member (sri-69) [Caenorhabditis elegans] 1.0E-177
blast CAA16428 Hypothetical protein Y61B8B.1 [Caenorhabditis elegans] ref|NP_507380.2| Serpentine Receptor, class I family member (sri-70) [Caenorhabditis elegans] 1.0E-151
blast CAA20952 Hypothetical protein Y102A5C.32 [Caenorhabditis elegans] ref|NP_507303.1| Serpentine Receptor, class I family member (sri-69) [Caenorhabditis elegans] 1.0E-129
blast CAA16428 Hypothetical protein Y61B8B.1 [Caenorhabditis elegans] ref|NP_507380.2| Serpentine Receptor, class I family member (sri-70) [Caenorhabditis elegans] 1.0E-106
blast CAD88220 Hypothetical protein Y60A3A.22 [Caenorhabditis elegans] ref|NP_001024272.1| Serpentine Receptor, class I family member (sri-67) [Caenorhabditis elegans] 5.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 9.8E-67
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.7E-37
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507303.1 7 15-37,44-66,92-114,121-143,191-213,243-265,275-297
Y102A5C.32 7 15-37,44-66,92-114,121-143,191-213,243-265,275-297
SNAP00000003170 5 27-49,56-78,126-148,178-200,210-232
GENEFINDER00000003183 7 15-37,44-66,92-114,121-143,191-213,243-265,275-297
Sequence
Target Sequence 
>C. ELEGANS:186512_AT
attgcgagcgtcatcgctgtgcatgtgtttccagtatatgctaaaataattggtgcgctg
atattcctcgcatttccagtgtatccgatgattgccatgcagattctggatgtaggaccg
gaaaagcaattggagtatatcaaaagggattttcccgattactacgccggattctctact
gtaccacattttgcaatctaccttgattcaccgctgttgtacagtgtttactctgtggtt
ttgctaactatgggtactatttttgcatctttggtatttgtcaacactgatctgattcgc
ttgatggtccgcttgaagccccaaatctcaccgcagaactaccaaaaacacgtggaggca
atccaaagcctgattgtacagatgttagttgccggtctgtgtgcgttgccactgtttggt
gtagccttcattctggcttttcaactcaagaatggacaatttattgggagaatcatgttc
gtgctgtggacttgtcattctactattaacatgatttctctgttcattttttttccgcca
taccgtcgatatttgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCGAGCGTCATCGCTGTGCATG 333 7 370 Antisense
ATTGGTGCGCTGATATTCCTCGCAT 611 3 418 Antisense
TTCCTCGCATTTCCAGTGTATCCGA 487 699 433 Antisense
GATTTTCCCGATTACTACGCCGGAT 555 371 517 Antisense
GATTCTCTACTGTACCACATTTTGC 321 431 539 Antisense
TTGCAATCTACCTTGATTCACCGCT 456 703 560 Antisense
GTGTTTACTCTGTGGTTTTGCTAAC 576 477 593 Antisense
GCGTTGCCACTGTTTGGTGTAGCCT 546 291 772 Antisense
GTGTAGCCTTCATTCTGGCTTTTCA 320 485 788 Antisense
ATCATGTTCGTGCTGTGGACTTGTC 548 29 841 Antisense
CCGCCATACCGTCGATATTTGTTCA 653 261 904 Antisense
Sequence Source Affymetrix Proprietary Database