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[186511_at]

Description F15G9.3 /REP_DB=WormBase Gene ID /WP=CE01551 /TR=SW:Q10035 /GB=CAA87333.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 71.8
(1.9)
A 		16.3
(-2.5)
A 		10.1
(-3)
A 		85.8
(3)
M 		76
B 55.3
(0.8)
A 		22.2
(-3)
A 		42.3
(-0.7)
A 		74.1
(3)
P 		52
C 23.1
(-3)
A 		51.3
(0.7)
A 		65.4
(2.6)
P 		68.6
(3)
P 		46
avr 50.1
(-0.4) 		29.9
(-3) 		39.3
(-1.8) 		76.2
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 78
(3)
A 		27.6
(-1.6)
A 		55.1
(0.9)
A 		48.5
(0.3)
M 		50
(0.4)
P 		12.2
(-3)
A 		66
B 40.8
(-1)
M 		63.3
(3)
A 		52.4
(1.1)
P 		29.2
(-3)
A 		46.8
(0.1)
A 		39.1
(-1.3)
A 		34
C 4.3
(-3)
A 		57.5
(2.3)
A 		4.5
(-3)
A 		45
(1.1)
A 		64.4
(3)
P 		29.1
(-0.5)
M 		60
avr 41
(0.2) 		49.5
(2.1) 		37.3
(-0.7) 		40.9
(0.1) 		53.7
(3) 		26.8
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 26.1
(3)
A 		3.5
(-2.8)
A 		2.6
(-3)
A 		12.6
(-0.4)
M 		24
B 17.6
(3)
A 		5.5
(-3)
A 		9.8
(-0.9)
A 		15.8
(2.1)
P 		12
C 7.7
(-3)
A 		14.7
(-0.2)
A 		22.8
(3)
P 		11.6
(-1.5)
P 		15
avr 17.1
(3) 		7.9
(-3) 		11.7
(-0.5) 		13.3
(0.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 14.4
(2.7)
A 		9.8
(0.4)
A 		12
(1.5)
A 		12.3
(1.6)
M 		15.1
(3)
P 		3
(-3)
A 		12
B 14.2
(-0.1)
M 		21.1
(3)
A 		12.7
(-0.8)
P 		7.7
(-3)
A 		19
(2.1)
A 		14.6
(0.1)
A 		13
C 1.6
(-2.8)
A 		17.5
(2)
A 		1.1
(-3)
A 		9
(-0.6)
A 		20.8
(3)
P 		9.7
(-0.4)
M 		20
avr 10.1
(-2.1) 		16.1
(1.6) 		8.6
(-3) 		9.7
(-2.3) 		18.3
(3) 		9.1
(-2.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16884
Sequence Type Exemplar sequence
Representative Public ID F15G9.3 NCBI
Target Description F15G9.3 /REP_DB=WormBase Gene ID /WP=CE01551 /TR=SW:Q10035 /GB=CAA87333.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077232 NCBI Caenorhabditis elegans F15G9.3 (F15G9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000012500 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9710161:9713644:-1 9/11 None
F15G9.3 ENSEMBL cdna:known chromosome:CEL140:X:9710161:9711463:-1 gene:F15G9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9710160-9711463(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15G9.3
Entrez Gene 184545 Entrez gene
SwissProt Q10035 EMBL-EBI
WormBase CE01551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87333 Hypothetical protein F15G9.3 [Caenorhabditis elegans] ref|NP_509633.1| F15G9.3 [Caenorhabditis elegans] sp|Q10035|YSI3_CAEEL Hypothetical protein F15G9.3 in chromosome X 1.0E-83
blast CAA87332 Hypothetical protein F15G9.2 [Caenorhabditis elegans] ref|NP_509634.1| F15G9.2 [Caenorhabditis elegans] sp|Q10034|YSI2_CAEEL Hypothetical protein F15G9.2 in chromosome X 1.0E-61
blast CAA87333 Hypothetical protein F15G9.3 [Caenorhabditis elegans] ref|NP_509633.1| F15G9.3 [Caenorhabditis elegans] sp|Q10035|YSI3_CAEEL Hypothetical protein F15G9.3 in chromosome X 1.0E-48
blast CAE69765 Hypothetical protein CBG16046 [Caenorhabditis briggsae] 7.0E-42
Sequence
Target Sequence 
>C. ELEGANS:186511_AT
agccatatatctttctcaagttttcaaacttccaattattttggagttacataatgtttt
ctacaaatgataacgcaaagtacagcaaaaccgatttttttcatgttttattatttttgc
agtatgctgttaaacaaacaataattcatcaacgccaggaaaggtccagtggggatccat
gggatgagtttttttacagaatttacagtgctgacaagccccgaattgacaacgctagac
aatgtcatagtgcaggaataaaacttaatttaaacaaagatttacaagacaagttgaatt
tcacagactatgacagcagtataaaggataaactgacaccgtatgcaatgagtttgtggc
tcaacaacagtttcttcccaagttacctccaaaacgcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCATATATCTTTCTCAAGTTTTC 146 85 59 Antisense
AACGCAAAGTACAGCAAAACCGATT 240 143 130 Antisense
TGTTTTATTATTTTTGCAGTATGCT 467 561 162 Antisense
ATTCATCAACGCCAGGAAAGGTCCA 301 7 202 Antisense
AGGTCCAGTGGGGATCCATGGGATG 691 57 220 Antisense
TTTACAGTGCTGACAAGCCCCGAAT 462 671 260 Antisense
AAGCCCCGAATTGACAACGCTAGAC 593 147 274 Antisense
GAATTTCACAGACTATGACAGCAGT 589 325 354 Antisense
GGATAAACTGACACCGTATGCAATG 626 505 384 Antisense
GTGGCTCAACAACAGTTTCTTCCCA 126 491 414 Antisense
TCCCAAGTTACCTCCAAAACGCAGG 599 257 434 Antisense
Sequence Source Affymetrix Proprietary Database