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[186509_at]

Description Y102A5C.33 /REP_DB=WormBase Gene ID /WP=CE20404 /TR=Q9XX65 /GB=CAA20970.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 25      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 5.2
(-3)
A 		39.2
(1.3)
A 		34
(0.6)
A 		52.8
(3)
A 		48
B 13.2
(-3)
A 		25.6
(-1.6)
A 		20
(-2.2)
A 		66.6
(3)
P 		53
C 17.4
(-3)
A 		32.8
(3)
A 		29.5
(1.7)
A 		17.4
(-3)
A 		15
avr 11.9
(-3) 		32.5
(0.7) 		27.8
(-0.2) 		45.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 47.5
(1)
P 		15
(-2)
A 		70.2
(3)
P 		3.7
(-3)
A 		39.4
(0.2)
P 		19.5
(-1.6)
A 		67
B 18
(-2.2)
A 		13
(-2.8)
A 		20.4
(-2)
A 		63.4
(3)
A 		18.1
(-2.2)
A 		11.4
(-3)
A 		52
C 32.7
(0.4)
A 		55.5
(3)
P 		3.3
(-3)
A 		55.4
(3)
A 		30
(0.1)
A 		21.8
(-0.9)
A 		52
avr 32.7
(0.9) 		27.8
(-0.4) 		31.3
(0.5) 		40.8
(3) 		29.2
(0) 		17.6
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.9
(-3)
A 		8.5
(2.7)
A 		8.9
(3)
A 		7.7
(2)
A 		7
B 4.2
(-3)
A 		6.3
(-1.7)
A 		4.6
(-2.8)
A 		14.2
(3)
P 		10
C 5.8
(-0.6)
A 		9.4
(2.3)
A 		10.3
(3)
A 		2.9
(-3)
A 		7
avr 4
(-3) 		8.1
(2.7) 		7.9
(2.4) 		8.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.8
(0.3)
P 		5.3
(-1.2)
A 		15.3
(3)
P 		0.9
(-3)
A 		11.9
(1.6)
P 		4.7
(-1.4)
A 		14
B 6.3
(-2)
A 		4.3
(-3)
A 		5
(-2.6)
A 		16.8
(3)
A 		7.3
(-1.5)
A 		4.2
(-3)
A 		13
C 12.1
(1.2)
A 		16.9
(3)
P 		0.8
(-3)
A 		11.1
(0.8)
A 		9.7
(0.3)
A 		7.3
(-0.6)
A 		16
avr 9.1
(2.3) 		8.8
(1.9) 		7
(-0.7) 		9.6
(3) 		9.6
(3) 		5.4
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13838
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.33 NCBI
Target Description Y102A5C.33 /REP_DB=WormBase Gene ID /WP=CE20404 /TR=Q9XX65 /GB=CAA20970.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074898 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-95) (srz-95) mRNA, complete cds. 11/11 None
Y102A5C.33 ENSEMBL cdna:known chromosome:CEL140:V:16994612:16996488:1 gene:Y102A5C.33 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16994611-16996488(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-95
Ensembl Y102A5C.33
Entrez Gene 190855 Entrez gene
SwissProt Q9XX65 EMBL-EBI
WormBase CE20404 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20970 Hypothetical protein Y102A5C.33 [Caenorhabditis elegans] ref|NP_507299.1| Serpentine Receptor, class Z family member (srz-95) [Caenorhabditis elegans] 1.0E-168
blast T22468 hypothetical protein F49H6.10 - Caenorhabditis elegans 1.0E-108
blast CAB04444 Hypothetical protein F49H6.11 [Caenorhabditis elegans] ref|NP_507314.1| Serpentine Receptor, class Z family member (srz-94) [Caenorhabditis elegans] 1.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507299.1 7 20-42,63-85,100-122,153-170,190-212,232-251,261-283
Y102A5C.33 7 20-42,63-85,100-122,153-170,190-212,232-251,261-283
Sequence
Target Sequence 
>C. ELEGANS:186509_AT
tccatttgttattgttttcccttgcaattatgagttttctcaaataccatttcccatacg
atttcttatattcccaaaattatatcagcaactatgtcaggaaattgaatgtgttttttg
ttttaaaggattttatatgttttgcaatatattttcttaactttggaaaacagttgggcg
acgagataatgaatatcaccttaagtgtttatttggtgttatacattattgttaacgtaa
tcatctgttttctaaccccatttatatacattccaattataattggtatgaagaaacacc
gacatctacattcccaacaacacatttacattcacgaatacatgttcatccagagtatca
tggttttattgttcaaaatagtaactgcaccattttgggttgagagtttcaattctgatc
tctcatttgcattgccactgatcatgtctattactgacgttatcacaacaccttggttaa
ttcagctgtcgtatttgagatgtaatttgacagaactgtacactttatatatttcattcg
atttttggaagtttctgaaaattgtatttggtggaatggatgctgctgtacatcccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATTTGTTATTGTTTTCCCTTGC 650 589 365 Antisense
GAGTTTTCTCAAATACCATTTCCCA 250 397 396 Antisense
ATACCATTTCCCATACGATTTCTTA 81 1 408 Antisense
AATCATCTGTTTTCTAACCCCATTT 235 171 603 Antisense
GTAACTGCACCATTTTGGGTTGAGA 23 463 745 Antisense
GAGTTTCAATTCTGATCTCTCATTT 379 399 768 Antisense
CTCTCATTTGCATTGCCACTGATCA 658 229 784 Antisense
TTGCCACTGATCATGTCTATTACTG 127 703 796 Antisense
ACTGACGTTATCACAACACCTTGGT 262 97 817 Antisense
ACACCTTGGTTAATTCAGCTGTCGT 360 109 832 Antisense
AATGGATGCTGCTGTACATCCCGTT 314 163 939 Antisense
Sequence Source Affymetrix Proprietary Database