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[186508_at]

Description E02H1.5 /REP_DB=WormBase Gene ID /WP=CE01540 /TR=SW:Q09526 /GB=CAA87380.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 74      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 72      6grp_total > 74      4grp_total > 32      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 337.9
(-3)
P 		383.7
(-0.5)
P 		447.4
(3)
P 		400
(0.4)
P 		110
B 386.8
(-2.2)
P 		376.9
(-3)
P 		422.8
(0.8)
P 		449.9
(3)
P 		73
C 315.4
(-3)
P 		393.8
(-0.1)
P 		432
(1.4)
P 		475.7
(3)
P 		160
avr 346.7
(-3) 		384.8
(-0.6) 		434.1
(2.5) 		441.9
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 284
1 2 3 4 5 6 range
A 232.7
(-3)
P 		290.7
(-1.7)
P 		501.2
(3)
P 		443.9
(1.7)
P 		356.5
(-0.2)
P 		390.8
(0.5)
P 		269
B 325.7
(-3)
P 		330.5
(-2.8)
P 		516.9
(3)
P 		373.8
(-1.5)
P 		448.3
(0.8)
P 		405.1
(-0.5)
P 		191
C 281.4
(-3)
P 		356.2
(-0.8)
P 		375.8
(-0.3)
P 		430
(1.3)
P 		404
(0.5)
P 		488.9
(3)
P 		208
avr 279.9
(-3) 		325.8
(-1.5) 		464.6
(3) 		415.9
(1.4) 		402.9
(1) 		428.3
(1.8) 		185
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 123
(3)
P 		83.3
(-0.7)
P 		116.9
(2.4)
P 		58.5
(-3)
P 		65
B 123.4
(3)
P 		93.1
(-3)
P 		98
(-2)
P 		95.9
(-2.4)
P 		30
C 104.4
(-0.9)
P 		113.2
(-0.2)
P 		150.6
(3)
P 		80.2
(-3)
P 		70
avr 116.9
(2.3) 		96.5
(-0.5) 		121.8
(3) 		78.2
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 42.9
(-3)
P 		103.4
(2.2)
P 		109.2
(2.7)
P 		112.6
(3)
P 		107.6
(2.6)
P 		95.2
(1.5)
P 		70
B 113.3
(-2)
P 		110
(-2.2)
P 		125.5
(-1.1)
P 		99
(-3)
P 		182.1
(3)
P 		151
(0.8)
P 		83
C 104.3
(-1.6)
P 		108.7
(-1.3)
P 		95.7
(-2.3)
P 		86.5
(-3)
P 		130.7
(0.4)
P 		163.7
(3)
P 		77
avr 86.8
(-3) 		107.4
(-0.7) 		110.1
(-0.4) 		99.4
(-1.6) 		140.1
(3) 		136.6
(2.6) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3895
Sequence Type Exemplar sequence
Representative Public ID E02H1.5 NCBI
Target Description E02H1.5 /REP_DB=WormBase Gene ID /WP=CE01540 /TR=SW:Q09526 /GB=CAA87380.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063663 NCBI Caenorhabditis elegans E02H1.5 (E02H1.5) mRNA, complete cds. 11/11 None
SNAP00000041923 ENSEMBL cdna:SNAP chromosome:CEL140:II:9595137:9596437:1 11/11 None
GENEFINDER00000041930 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9595137:9596437:1 11/11 None
E02H1.5 ENSEMBL cdna:known chromosome:CEL140:II:9595134:9596483:1 gene:E02H1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9595133-9596434(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02H1.5
Entrez Gene 174510 Entrez gene
SwissProt Q09526 EMBL-EBI
WormBase CE01540 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87380 Hypothetical protein E02H1.5 [Caenorhabditis elegans] ref|NP_496064.1| E02H1.5 [Caenorhabditis elegans] sp|Q09526|YQN5_CAEEL Hypothetical protein E02H1.5 in chromosome II 1.0E-133
blast CAA87380 Hypothetical protein E02H1.5 [Caenorhabditis elegans] ref|NP_496064.1| E02H1.5 [Caenorhabditis elegans] sp|Q09526|YQN5_CAEEL Hypothetical protein E02H1.5 in chromosome II 1.0E-131
blast CAE57908 Hypothetical protein CBG00958 [Caenorhabditis briggsae] 1.0E-109
blast CAE57908 Hypothetical protein CBG00958 [Caenorhabditis briggsae] 1.0E-107
blast XP_791061 PREDICTED: similar to RIKEN cDNA 2700060E02 [Strongylocentrotus purpuratus] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186508_AT
gcaccgtctggatgctccagagcggcggcgattgactatgtcttgaacgctgctgttcaa
aagatttatgaacagaaaggcggtgacactgaactctgctcgagtcggctcagagaacaa
gctgaaaaagtgctcgaagcacatcgagattcccaaaatccacttaaccgacttgattat
tcttcaccaaattttgctgaaaatgcacgtgctctgtgctcaattctcggcatttctgct
catcaccccgatccaaaagttctaatgaaagctgcttgtttgtatattgctgaaaatttg
ggagatgatgtgattgctgaagagactgaagaagtattgaaaaataagaaaactctaaat
atcaacgcgtttccaattggaatgcaagctccaaagaatggagccgtacatttttcggct
cgtcttcttcgtctcatttgtttacgacaattgcgagtggtctccagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCGTCTGGATGCTCCAGAGCGG 572 313 217 Antisense
CAGAGCGGCGGCGATTGACTATGTC 129 205 234 Antisense
TGACTATGTCTTGAACGCTGCTGTT 314 571 249 Antisense
AAAGGCGGTGACACTGAACTCTGCT 396 121 292 Antisense
GAACTCTGCTCGAGTCGGCTCAGAG 27 349 307 Antisense
GAAGCACATCGAGATTCCCAAAATC 703 339 352 Antisense
TCCCAAAATCCACTTAACCGACTTG 663 583 367 Antisense
ATGCACGTGCTCTGTGCTCAATTCT 4 43 419 Antisense
GCCGTACATTTTTCGGCTCGTCTTC 484 283 619 Antisense
TCTTCTTCGTCTCATTTGTTTACGA 113 617 639 Antisense
GACAATTGCGAGTGGTCTCCAGAAT 218 365 662 Antisense
Sequence Source Affymetrix Proprietary Database