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[186507_at]

Description F26D11.9 /REP_DB=WormBase Gene ID /WP=CE17711 /TR=O61964 /GB=AAC17744.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 2.6
(-2.8)
A 		6.9
(-2)
A 		1.7
(-3)
A 		33
(3)
A 		31
B 6.5
(3)
A 		2.4
(-1.5)
A 		1
(-3)
A 		1.4
(-2.6)
A 		6
C 8.1
(3)
A 		2
(-2.9)
A 		1.9
(-3)
A 		4.6
(-0.4)
A 		6
avr 5.7
(-0.8) 		3.8
(-1.8) 		1.5
(-3) 		13
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 1.5
(-2.9)
A 		3
(-2.6)
A 		37.6
(3)
A 		7.5
(-1.9)
A 		2.1
(-2.8)
A 		0.7
(-3)
A 		37
B 1.1
(-3)
A 		1.1
(-3)
A 		1.7
(-2.7)
A 		14
(3)
A 		1.7
(-2.7)
A 		1.3
(-2.9)
A 		13
C 1.2
(-3)
A 		7
(-2)
A 		9.2
(-1.6)
A 		34.9
(3)
A 		15.1
(-0.5)
A 		1.5
(-2.9)
A 		34
avr 1.3
(-3) 		3.7
(-2.1) 		16.2
(2.1) 		18.8
(3) 		6.3
(-1.3) 		1.2
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.9
(-2.3)
A 		1.5
(-1.5)
A 		0.4
(-3)
A 		4.8
(3)
A 		4
B 2.1
(3)
A 		0.6
(-1.7)
A 		0.2
(-3)
A 		0.3
(-2.7)
A 		2
C 2.7
(3)
A 		0.6
(-3)
A 		0.7
(-2.7)
A 		0.8
(-2.4)
A 		2
avr 1.9
(2.6) 		0.9
(-1.1) 		0.4
(-3) 		2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.3
(-2.9)
A 		1.1
(-2.3)
A 		8.2
(3)
A 		1.9
(-1.7)
A 		0.6
(-2.7)
A 		0.2
(-3)
A 		8
B 0.4
(-3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		3.7
(3)
A 		0.7
(-2.5)
A 		0.5
(-2.8)
A 		3
C 0.4
(-3)
A 		2.1
(-1.5)
A 		2.4
(-1.2)
A 		7
(3)
A 		4.9
(1.1)
A 		0.5
(-2.9)
A 		7
avr 0.4
(-3) 		1.2
(-1.7) 		3.7
(2.2) 		4.2
(3) 		2.1
(-0.3) 		0.4
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12023
Sequence Type Exemplar sequence
Representative Public ID F26D11.9 NCBI
Target Description F26D11.9 /REP_DB=WormBase Gene ID /WP=CE17711 /TR=O61964 /GB=AAC17744.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072647 NCBI Caenorhabditis elegans F26D11.9 (F26D11.9) mRNA, complete cds. 11/11 None
SNAP00000012539 ENSEMBL cdna:SNAP chromosome:CEL140:V:7959868:7961431:-1 11/11 None
GENEFINDER00000012554 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7959868:7961431:-1 11/11 None
F26D11.9 ENSEMBL cdna:known chromosome:CEL140:V:7959868:7961431:-1 gene:F26D11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7959868-7961432(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26D11.9
Entrez Gene 184978 Entrez gene
SwissProt O61964 EMBL-EBI
WormBase CE17711 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17744 Hypothetical protein F26D11.9 [Caenorhabditis elegans] ref|NP_505048.1| F26D11.9 [Caenorhabditis elegans] 1.0E-130
blast CAE64024 Hypothetical protein CBG08619 [Caenorhabditis briggsae] 1.0E-51
blast AAC17748 Hypothetical protein F26D11.5 [Caenorhabditis elegans] ref|NP_505046.1| F26D11.5 [Caenorhabditis elegans] 7.0E-27
Sequence
Target Sequence 
>C. ELEGANS:186507_AT
aagtgtatgtttgcgtgtgatgggaacaccaaacaaaatagatccacccactgctgcaag
actttgtcgtaaagaagcaaatggtcgactcatgacaattgataatcaacaagaacgaga
atggatcaagtcaacggcactcggaggtagttcgtatcattggttgatagtggcaggata
tcgtagtcgaaattgtcaaatgaaaccacatgattgcaaggataaagaaacggcatttac
aaaagtgaacggaacatctgacaacaagttcctctatacgagatggtttccgattgttca
caacagaatcacatactcagtgttagacaactgtctcaattatttcactcttcaaccact
cagcgctgacatgctgattcaagacttcacgtgtcatgattggta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGTATGTTTGCGTGTGATGGGA 406 159 348 Antisense
AAACAAAATAGATCCACCCACTGCT 128 129 378 Antisense
ACCCACTGCTGCAAGACTTTGTCGT 120 91 393 Antisense
ATGGATCAAGTCAACGGCACTCGGA 203 51 468 Antisense
GGCACTCGGAGGTAGTTCGTATCAT 362 535 483 Antisense
AACATCTGACAACAAGTTCCTCTAT 326 137 600 Antisense
GTTCCTCTATACGAGATGGTTTCCG 416 441 615 Antisense
GATGGTTTCCGATTGTTCACAACAG 16 409 629 Antisense
GTCTCAATTATTTCACTCTTCAACC 42 471 680 Antisense
AGCGCTGACATGCTGATTCAAGACT 546 81 709 Antisense
AAGACTTCACGTGTCATGATTGGTA 533 153 728 Antisense
Sequence Source Affymetrix Proprietary Database