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[186506_s_at]

Description C48B4.12A /REP_DB=WormBase Gene ID /WP=CE20576 /TR=Q9TW20 /GB=CAA80173.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 5.6
(-2.9)
A 		4
(-3)
A 		17.6
(-2.2)
A 		109.7
(3)
A 		106
B 9.4
(-2.7)
A 		18.4
(0.3)
A 		8.5
(-3)
A 		26.4
(3)
A 		18
C 4.8
(-3)
A 		7.9
(-2.7)
A 		23.3
(-1)
A 		59.1
(3)
A 		54
avr 6.6
(-3) 		10.1
(-2.6) 		16.5
(-2) 		65.1
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 6
(-3)
A 		20.8
(-1.6)
A 		26.7
(-1)
A 		7
(-2.9)
A 		69.1
(3)
A 		22.7
(-1.4)
A 		63
B 16.8
(-1)
A 		19.8
(-0.4)
A 		30.2
(1.7)
A 		36.6
(3)
A 		7.2
(-3)
A 		8.7
(-2.7)
A 		29
C 5.6
(-3)
A 		45.8
(3)
A 		6.2
(-2.9)
A 		36.5
(1.6)
A 		30.5
(0.7)
A 		28.6
(0.4)
A 		40
avr 9.5
(-3) 		28.8
(1.4) 		21
(-0.4) 		26.7
(1) 		35.6
(3) 		20
(-0.6) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2
(-2.6)
A 		0.9
(-3)
A 		4.6
(-1.5)
A 		16.1
(3)
A 		15
B 3
(-1.3)
A 		4.6
(1.3)
A 		2
(-3)
A 		5.6
(3)
A 		4
C 1.6
(-3)
A 		2.3
(-2.5)
A 		8.1
(1.6)
A 		10
(3)
A 		8
avr 2.2
(-3) 		2.6
(-2.7) 		4.9
(-1.1) 		10.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 1.1
(-3)
A 		7.4
(-1.1)
A 		5.8
(-1.6)
A 		1.8
(-2.8)
A 		20.9
(3)
A 		5.5
(-1.7)
A 		20
B 5.8
(-0.4)
A 		6.6
(0.3)
A 		7.3
(0.9)
A 		9.7
(3)
A 		2.9
(-3)
A 		3.2
(-2.7)
A 		7
C 2.1
(-2.8)
A 		14
(3)
A 		1.6
(-3)
A 		7.3
(-0.2)
A 		9.9
(1)
A 		9.6
(0.9)
A 		12
avr 3
(-3) 		9.3
(1.6) 		4.9
(-1.6) 		6.3
(-0.6) 		11.2
(3) 		6.1
(-0.7) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186506_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6442
Sequence Type Exemplar sequence
Representative Public ID C48B4.12A NCBI
Target Description C48B4.12A /REP_DB=WormBase Gene ID /WP=CE20576 /TR=Q9TW20 /GB=CAA80173.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066721(11), NM_066720(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066721 NCBI Caenorhabditis elegans C48B4.12a (C48B4.12) mRNA, complete cds. 11/11 None
NM_066720 NCBI Caenorhabditis elegans C48B4.12b (C48B4.12) mRNA, complete cds. 11/11 None
C48B4.12b ENSEMBL cdna:known chromosome:CEL140:III:9597255:9598174:1 gene:C48B4.12 11/11 None
C48B4.12a ENSEMBL cdna:known chromosome:CEL140:III:9597255:9598192:1 gene:C48B4.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012185 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9597250-9598170(+) 100.0 100.0
Public Domain and Genome References
Ensembl C48B4.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82385 Hypothetical protein C48B4.12b [Caenorhabditis elegans] emb|CAA80172.1| Hypothetical protein C48B4.12b [Caenorhabditis elegans] ref|NP_499121.1| C48B4.12b [Caenorhabditis elegans] 1.0E-82
blast CAA82386 Hypothetical protein C48B4.12a [Caenorhabditis elegans] emb|CAA80173.1| Hypothetical protein C48B4.12a [Caenorhabditis elegans] ref|NP_499122.1| C48B4.12a [Caenorhabditis elegans] 4.0E-81
blast CAA82385 Hypothetical protein C48B4.12b [Caenorhabditis elegans] emb|CAA80172.1| Hypothetical protein C48B4.12b [Caenorhabditis elegans] ref|NP_499121.1| C48B4.12b [Caenorhabditis elegans] 2.0E-79
blast CAA82386 Hypothetical protein C48B4.12a [Caenorhabditis elegans] emb|CAA80173.1| Hypothetical protein C48B4.12a [Caenorhabditis elegans] ref|NP_499122.1| C48B4.12a [Caenorhabditis elegans] 2.0E-79
blast CAE65156 Hypothetical protein CBG10024 [Caenorhabditis briggsae] 1.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499121.1 1 4-23
C48B4.12b 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:186506_S_AT
gattggccatcaagattcccacaacatccagctggatttagctataaatgcaagaataga
cagtttgaaacatcgggaccttcacaaaaccaaccaccaattggaaatgacggagaagag
acaccaaaaccaactccaaaaccaactactaccacaacagtcaagccaacttcacctacc
acgttgaaaatgacgtcacctactaccactacaaagaagcctgcaccagctgctccaact
gctacaacattctggatcagaagcccaactccaccgaatactccagcaccagtagttaag
ggaggtgcagcatataccctcggacacccacaatttgctacagttaagccagtatctgta
tttgcaccagatgctgcattgcatcctcttaatggagctgctggaaatatggactttgat
atcaaacctgttggagtcccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGGCCATCAAGATTCCCACAAC 676 435 109 Antisense
CACAACAGTCAAGCCAACTTCACCT 551 193 261 Antisense
GTCACCTACTACCACTACAAAGAAG 497 463 303 Antisense
TACAAAGAAGCCTGCACCAGCTGCT 349 641 318 Antisense
TGCTCCAACTGCTACAACATTCTGG 76 581 339 Antisense
ACCGAATACTCCAGCACCAGTAGTT 447 87 381 Antisense
GGGAGGTGCAGCATATACCCTCGGA 446 495 408 Antisense
CGGACACCCACAATTTGCTACAGTT 130 243 429 Antisense
GCACCAGATGCTGCATTGCATCCTC 357 313 472 Antisense
GCATCCTCTTAATGGAGCTGCTGGA 179 309 489 Antisense
GATATCAAACCTGTTGGAGTCCCGA 274 423 526 Antisense
Sequence Source Affymetrix Proprietary Database