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[186504_s_at]

Description C14C11.1 /REP_DB=WormBase Gene ID /WP=CE06820 /TR=Q17980 /GB=AAA96108.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 7.1
(-2.5)
A 		18.6
(-0.4)
A 		4.1
(-3)
A 		37.9
(3)
A 		34
B 1.3
(-3)
A 		6.7
(3)
A 		1.9
(-2.3)
A 		1.9
(-2.3)
A 		5
C 10.1
(0.6)
A 		1.5
(-3)
A 		9.4
(0.3)
A 		15.7
(3)
A 		14
avr 6.2
(-2.5) 		8.9
(-1.3) 		5.1
(-3) 		18.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		0.7
(-3)
A 		39.1
(-1)
A 		4.2
(-2.8)
A 		84.8
(1.4)
P 		115.9
(3)
P 		115
B 2.6
(-3)
A 		4.8
(-2.9)
A 		3.9
(-2.9)
A 		10.5
(-2.6)
A 		111.4
(2.8)
P 		114.8
(3)
P 		112
C 1.1
(-3)
A 		25.7
(-2)
P 		2.6
(-2.9)
A 		29.7
(-1.8)
A 		82.6
(0.3)
P 		149.5
(3)
P 		148
avr 1.8
(-3) 		10.4
(-2.6) 		15.2
(-2.4) 		14.8
(-2.4) 		92.9
(1.4) 		126.7
(3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.6
(-1)
A 		4
(1)
A 		1.1
(-3)
A 		5.5
(3)
A 		4
B 0.4
(-3)
A 		1.6
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1
C 3.4
(3)
A 		0.4
(-3)
A 		3.3
(2.8)
A 		2.7
(1.6)
A 		3
avr 2.1
(-0.7) 		2
(-1.2) 		1.6
(-3) 		2.9
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.3
(-3)
A 		8.5
(-1.2)
A 		1.1
(-2.8)
A 		25.6
(2.4)
P 		28.2
(3)
P 		28
B 0.9
(-3)
A 		1.6
(-2.9)
A 		0.9
(-3)
A 		2.8
(-2.7)
A 		45.2
(3)
P 		42.8
(2.7)
P 		44
C 0.4
(-3)
A 		7.8
(-2.1)
P 		0.7
(-3)
A 		6
(-2.3)
A 		26.7
(0.2)
P 		50.1
(3)
P 		50
avr 0.5
(-3) 		3.2
(-2.6) 		3.4
(-2.6) 		3.3
(-2.6) 		32.5
(1.8) 		40.4
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186504_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12287
Sequence Type Exemplar sequence
Representative Public ID C14C11.1 NCBI
Target Description C14C11.1 /REP_DB=WormBase Gene ID /WP=CE06820 /TR=Q17980 /GB=AAA96108.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072091(11), NM_072044(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072091 NCBI Caenorhabditis elegans C14C11.1 (C14C11.1) mRNA, complete cds. 11/11 A 
NM_072044 NCBI Caenorhabditis elegans ZC317.6 (ZC317.6) mRNA, complete cds. 11/11 A 
SNAP00000024124 ENSEMBL cdna:SNAP chromosome:CEL140:V:5666249:5667820:1 11/11 None
GENEFINDER00000024137 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5666249:5667820:1 11/11 None
SNAP00000026642 ENSEMBL cdna:SNAP chromosome:CEL140:V:5465670:5467436:-1 11/11 None
GENEFINDER00000026645 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5465670:5468364:-1 11/11 None
ZC317.6 ENSEMBL cdna:known chromosome:CEL140:V:5465670:5466737:-1 gene:ZC317.6 11/11 A 
C14C11.1 ENSEMBL cdna:known chromosome:CEL140:V:5666249:5667820:1 gene:C14C11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5666248-5667820(+) 100.0 100.0
chrV:5465669-5468364(-) 99.14 99.14
Public Domain and Genome References
Gene Title

Ensembl ZC317.6
C14C11.1
Entrez Gene 182610 Entrez gene
191142 Entrez gene
SwissProt Q17980 EMBL-EBI
Q23078 EMBL-EBI
WormBase CE06820 Wormbase
CE38921 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 0.0
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 0.0
blast AAB04963 Hypothetical protein ZC317.6 [Caenorhabditis elegans] 1.0E-179
blast AAA96108 Hypothetical protein C14C11.1 [Caenorhabditis elegans] ref|NP_504492.1| C14C11.1 [Caenorhabditis elegans] 1.0E-179
Sequence
Target Sequence 
>C. ELEGANS:186504_S_AT
gctattcaagttcaacgacccgagatgcatgaaattgactatcgatgttattctggagac
tttataagcaatctcgtgacagctatgtcgatggctgtgaacagtccgtatctttcgaaa
cttgatagattggcaattggagtgcttgctttcgaaagggccatgtgttttatctacgat
cgcccgacaaattcaataattcttctcgacactcatatgcattttaaaggacaagctgga
agtgttctctgtgttgcatcttttgaagatattacggatttcatcgtttcggtaactaaa
ctcgtgttccatgaagttttcaaaactgcagatgtcaccggtcaattcgaaattacatgc
ctgatgcttacaagtctgacgaacaaagtccacaaaggaggcatctttcttccaatcaaa
tcgagtatgccaagagtcacattatcgataccattgaagcctattagaatcagagcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATTCAAGTTCAACGACCCGAGA 11 305 508 Antisense
AACGACCCGAGATGCATGAAATTGA 697 143 521 Antisense
GACTATCGATGTTATTCTGGAGACT 312 373 544 Antisense
GGCTGTGAACAGTCCGTATCTTTCG 176 541 600 Antisense
AGTCCGTATCTTTCGAAACTTGATA 292 61 610 Antisense
AGTCTGACGAACAAAGTCCACAAAG 647 59 880 Antisense
GTCCACAAAGGAGGCATCTTTCTTC 484 477 895 Antisense
AGGAGGCATCTTTCTTCCAATCAAA 339 57 903 Antisense
CTTCCAATCAAATCGAGTATGCCAA 239 219 916 Antisense
ATCGATACCATTGAAGCCTATTAGA 225 37 951 Antisense
GAAGCCTATTAGAATCAGAGCAAAA 294 345 963 Antisense
Sequence Source Affymetrix Proprietary Database