[Home] | [Total List]

[186503_at]

Description F01G12.6 /REP_DB=WormBase Gene ID /WP=CE07015 /TR=Q19101 /GB=AAA96218.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 4.9
(-3)
A 		21.7
(-0.6)
A 		35.2
(1.3)
A 		46.7
(3)
A 		42
B 4.5
(-3)
A 		43.9
(3)
A 		22.5
(-0.3)
A 		43.5
(2.9)
A 		39
C 5.3
(-3)
A 		33.2
(1.3)
A 		27.9
(0.5)
A 		44.4
(3)
A 		39
avr 4.9
(-3) 		32.9
(1.2) 		28.5
(0.5) 		44.9
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 83.2
(3)
A 		4.7
(-2.9)
A 		32.7
(-0.8)
A 		23.7
(-1.5)
A 		67.9
(1.8)
A 		3.6
(-3)
A 		80
B 58
(1)
A 		68.1
(3)
A 		63
(2)
A 		50.8
(-0.4)
A 		37.9
(-3)
A 		37.9
(-3)
A 		30
C 9.9
(-2.9)
A 		74.6
(3)
A 		20.6
(-1.9)
A 		8.8
(-3)
A 		32.9
(-0.8)
A 		56.4
(1.3)
A 		66
avr 50.4
(3) 		49.1
(2.7) 		38.8
(-0.1) 		27.8
(-3) 		46.2
(1.9) 		32.6
(-1.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.8
(-3)
A 		4.7
(-0.6)
A 		9.2
(3)
A 		6.8
(1.1)
A 		7
B 1.4
(-3)
A 		10.8
(3)
A 		5.2
(-0.6)
A 		9.3
(2)
A 		9
C 1.8
(-3)
A 		9.6
(2.9)
A 		9.7
(3)
A 		7.5
(1.3)
A 		8
avr 1.7
(-3) 		8.4
(3) 		8
(2.6) 		7.9
(2.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 15.3
(1.4)
A 		1.7
(-2.8)
A 		7.1
(-1.1)
A 		6
(-1.4)
A 		20.5
(3)
A 		0.9
(-3)
A 		20
B 20.2
(1.4)
A 		22.7
(3)
A 		15.3
(-1.8)
A 		13.5
(-3)
A 		15.4
(-1.8)
A 		14.1
(-2.6)
A 		9
C 3.7
(-2.5)
A 		22.8
(3)
A 		5.2
(-2)
A 		1.8
(-3)
A 		10.7
(-0.5)
A 		18.9
(1.9)
A 		21
avr 13.1
(1.2) 		15.7
(3) 		9.2
(-1.5) 		7.1
(-3) 		15.5
(2.9) 		11.3
(-0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17840
Sequence Type Exemplar sequence
Representative Public ID F01G12.6 NCBI
Target Description F01G12.6 /REP_DB=WormBase Gene ID /WP=CE07015 /TR=Q19101 /GB=AAA96218.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078265 NCBI Caenorhabditis elegans F01G12.6 (F01G12.6) mRNA, complete cds. 11/11 None
SNAP00000041964 ENSEMBL cdna:SNAP chromosome:CEL140:X:16399124:16401934:-1 11/11 None
GENEFINDER00000041969 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16399124:16401883:-1 11/11 None
F01G12.6 ENSEMBL cdna:known chromosome:CEL140:X:16399124:16403102:-1 gene:F01G12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16399123-16403102(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01G12.6
Entrez Gene 181709 Entrez gene
SwissProt Q19101 EMBL-EBI
WormBase CE07015 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96218 Hypothetical protein F01G12.6 [Caenorhabditis elegans] ref|NP_510666.1| F01G12.6 [Caenorhabditis elegans] 0.0
blast CAE69972 Hypothetical protein CBG16369 [Caenorhabditis briggsae] 0.0
blast EAL31930 GA11164-PA [Drosophila pseudoobscura] 1.0E-55
Sequence
Target Sequence 
>C. ELEGANS:186503_AT
gaagctgacacattggccgagctcaaagagatgcgacaaaaggttatggagcttgagact
caaaaccatgtgtgcacgaatcagctcaagcgtcaggacgaggagatgaagcgtgtgcgc
gaagattcagaagtgttggtgaagaagaggaaagagttggaggatcagttgaaagatgag
aaggagaagttggacaacaaggagagcgagttcaacgagggtcgaatcaacgatcgactc
aagtactctgaagccatgcagacgattcaggaccttcagagcagtatttcacagttggag
ctcaagaaagcggaaaaatggacacaaaatcagttgagaggcagcagtgtctgtgatctt
gatgaggaatcgaattcgcatggctcaatttgctcgaacgtagaccatctttcgctggca
tctgacgagatgaatgcactactcgccgacatgactgtccgtatcccaactcttgacgat
ttggctgaagaaggatctgcaactgagactgatgagttgcggcctaaggagctcaacgat
gg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTGACACATTGGCCGAGCTCA 542 343 826 Antisense
GTGTGCACGAATCAGCTCAAGCGTC 557 487 895 Antisense
GATCGACTCAAGTACTCTGAAGCCA 632 417 1057 Antisense
AGCCATGCAGACGATTCAGGACCTT 18 85 1077 Antisense
GGACCTTCAGAGCAGTATTTCACAG 181 523 1095 Antisense
GAGGCAGCAGTGTCTGTGATCTTGA 566 405 1163 Antisense
GAATTCGCATGGCTCAATTTGCTCG 149 325 1197 Antisense
TTTGCTCGAACGTAGACCATCTTTC 699 667 1214 Antisense
CATCTTTCGCTGGCATCTGACGAGA 442 213 1231 Antisense
GTATCCCAACTCTTGACGATTTGGC 420 455 1286 Antisense
TGCGGCCTAAGGAGCTCAACGATGG 479 581 1343 Antisense
Sequence Source Affymetrix Proprietary Database