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[186501_at] 7TM chemoreceptor, str family

Description Y17G9A.1 /REP_DB=WormBase Gene ID /WP=CE24176 /TR=Q9N483 /GB=AAF60438.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 19      6grp_cgc > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 23.4
(-1.5)
A 		5.7
(-3)
A 		40.1
(-0.1)
P 		75.9
(3)
M 		70
B 22.4
(1.8)
A 		27.6
(3)
A 		1.6
(-3)
A 		20.2
(1.3)
A 		26
C 12.6
(-2.1)
A 		50.7
(1.6)
A 		3.1
(-3)
A 		64.9
(3)
A 		62
avr 19.5
(-2.3) 		28
(-1) 		14.9
(-3) 		53.7
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 41.9
(3)
A 		12.9
(-3)
A 		26.7
(-0.1)
A 		15.8
(-2.4)
A 		33.6
(1.3)
A 		40.5
(2.7)
A 		29
B 27.5
(1.8)
A 		33.8
(3)
P 		2
(-3)
A 		9.5
(-1.6)
A 		25.9
(1.5)
A 		21.2
(0.6)
P 		32
C 9
(-2.6)
A 		32.6
(3)
A 		7.2
(-3)
A 		28.6
(2.1)
A 		24.3
(1)
A 		28.8
(2.1)
A 		25
avr 26.1
(1.6) 		26.4
(1.7) 		12
(-3) 		18
(-1) 		27.9
(2.2) 		30.2
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.5
(1.4)
A 		1.2
(-3)
A 		10.5
(2.6)
P 		11.1
(3)
M 		10
B 7.2
(3)
A 		6.8
(2.6)
A 		0.4
(-3)
A 		4.3
(0.4)
A 		7
C 4.2
(-1.6)
A 		14.6
(3)
A 		1.1
(-3)
A 		10.9
(1.4)
A 		14
avr 6.6
(0.2) 		7.5
(1.4) 		4
(-3) 		8.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.7
(0.6)
A 		4.6
(-2.4)
A 		5.8
(-1.2)
A 		4
(-3)
A 		10.1
(3)
A 		9.9
(2.8)
A 		6
B 9.6
(2.1)
A 		11.3
(3)
P 		0.5
(-3)
A 		2.5
(-1.9)
A 		10.5
(2.6)
A 		7.9
(1.1)
P 		11
C 3.3
(-1.9)
A 		9.9
(3)
A 		1.8
(-3)
A 		5.7
(-0.1)
A 		7.9
(1.5)
A 		9.6
(2.8)
A 		8
avr 6.9
(0.7) 		8.6
(2.2) 		2.7
(-3) 		4.1
(-1.8) 		9.5
(3) 		9.1
(2.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10522
Sequence Type Exemplar sequence
Representative Public ID Y17G9A.1 NCBI
Target Description Y17G9A.1 /REP_DB=WormBase Gene ID /WP=CE24176 /TR=Q9N483 /GB=AAF60438.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068258 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-173) (str-173) mRNA, complete cds. 11/11 None
SNAP00000012346 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4862676:4864093:1 11/11 None
GENEFINDER00000012357 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4862175:4864093:1 11/11 None
Y17G9A.1 ENSEMBL cdna:known chromosome:CEL140:IV:4862175:4864093:1 gene:Y17G9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4862180-4864099(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-173
Ensembl Y17G9A.1
Entrez Gene 189459 Entrez gene
SwissProt Q9N483 EMBL-EBI
WormBase CE35062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500659 Seven TM Receptor family member (str-173) [Caenorhabditis elegans] gb|AAF60438.2| Seven tm receptor protein 173 [Caenorhabditis elegans] 0.0
blast NP_500659 Seven TM Receptor family member (str-173) [Caenorhabditis elegans] gb|AAF60438.2| Seven tm receptor protein 173 [Caenorhabditis elegans] 1.0E-153
blast NP_500661 Seven TM Receptor family member (str-175) [Caenorhabditis elegans] gb|AAF60442.2| Seven tm receptor protein 175 [Caenorhabditis elegans] 1.0E-105
blast CAE66406 Hypothetical protein CBG11673 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 9.9E-15
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-8
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500659.2 7 11-33,46-68,93-115,128-150,202-224,255-277,287-309
Y17G9A.1 7 11-33,46-68,93-115,128-150,202-224,255-277,287-309
SNAP00000012346 5 15-37,57-76,126-148,179-201,211-233
GENEFINDER00000012357 7 11-33,46-68,93-115,128-150,202-224,255-277,287-309
Sequence
Target Sequence 
>C. ELEGANS:186501_AT
atgaatcttctttgcggttgtatcggagtcactgtatatggaattgctattcattttatt
tatcggttattagcgctagaaagaaaccccgttaaagactctttcaacatgaaaatggag
gattgcgtgtacggtgcagctgtattctatccaattgataaaaatggtatcaaaactatc
agttggatctcattttttggattagggtgttacttaacacttctaacaattccatttatt
tcaatcttggttgctggagcaaaaagttggaatcatgttcaaaaactgctcgaacatgga
gaatccgagtttgccaggaatttgcagatgcaattgtacaaggccttaatagctcagact
cttatcccagtggtattcttcttcacaccatttggttgtgtatttgtacttcctgcattt
gaaattgaatgtcaatttatgtcagctcccatcacattggtttttgcaatttatcccgca
atcgatcctttacccaatttgttttttgtggactactacaggaatcctatatcaaatttt
ctccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATCTTCTTTGCGGTTGTATCG 556 43 295 Antisense
TGCGGTTGTATCGGAGTCACTGTAT 387 583 307 Antisense
GGAGGATTGCGTGTACGGTGCAGCT 74 517 411 Antisense
ACGGTGCAGCTGTATTCTATCCAAT 62 97 425 Antisense
TAATAGCTCAGACTCTTATCCCAGT 37 635 641 Antisense
TCCCAGTGGTATTCTTCTTCACACC 212 597 659 Antisense
GTGTATTTGTACTTCCTGCATTTGA 158 487 692 Antisense
GAATGTCAATTTATGTCAGCTCCCA 39 333 721 Antisense
TCAGCTCCCATCACATTGGTTTTTG 241 623 736 Antisense
CAATCGATCCTTTACCCAATTTGTT 565 181 773 Antisense
AATCCTATATCAAATTTTCTCCGCA 451 167 817 Antisense
Sequence Source Affymetrix Proprietary Database