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[186498_s_at]

Description Y46G5A.17 /REP_DB=WormBase Gene ID /WP=CE28125 /TR=Q9U2F2 /GB=CAB60359.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_highest_nonorm > 98      6grp_total > 59      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1121
1 2 3 4 range
A 1336.8
(-0.3)
P 		913.9
(-3)
P 		1042.2
(-2.2)
P 		1855.6
(3)
P 		942
B 1777.7
(2.2)
P 		1039.8
(-1.7)
P 		801.4
(-3)
P 		1922.4
(3)
P 		1121
C 1540.5
(1.3)
P 		1287.6
(-0.7)
P 		996.7
(-3)
P 		1760.8
(3)
P 		764
avr 1551.7
(1) 		1080.4
(-2.1) 		946.8
(-3) 		1846.3
(3) 		900

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1979
1 2 3 4 5 6 range
A 1277.1
(-0.4)
P 		769.7
(-1.9)
P 		420.6
(-3)
P 		888
(-1.6)
P 		1101.5
(-0.9)
P 		2399.6
(3)
P 		1979
B 1101.9
(0.7)
P 		869.1
(-0.7)
P 		456.9
(-3)
P 		711.4
(-1.6)
P 		1053.1
(0.4)
P 		1510.7
(3)
P 		1054
C 1897.7
(3)
P 		635.5
(-2.6)
P 		762.5
(-2)
P 		540.9
(-3)
P 		1537.9
(1.4)
P 		1885.1
(2.9)
P 		1357
avr 1425.6
(0.8) 		758.1
(-2.1) 		546.7
(-3) 		713.4
(-2.3) 		1230.8
(-0) 		1931.8
(3) 		1385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 486.7
(3)
P 		198.4
(-3)
P 		272.4
(-1.5)
P 		271.6
(-1.5)
P 		288
B 566.9
(3)
P 		256.8
(-1.9)
P 		185.7
(-3)
P 		409.7
(0.5)
P 		381
C 509.9
(3)
P 		370.2
(-0.9)
P 		347.4
(-1.6)
P 		296.9
(-3)
P 		213
avr 521.2
(3) 		275.1
(-2.8) 		268.5
(-3) 		326.1
(-1.6) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 235.4
(-1.2)
P 		273.7
(-0.8)
P 		91.6
(-3)
P 		225.2
(-1.4)
P 		332.4
(-0.1)
P 		584.2
(3)
P 		493
B 383.4
(0.6)
P 		289.3
(-0.6)
P 		110.9
(-3)
P 		188.4
(-2)
P 		427.9
(1.2)
P 		563.3
(3)
P 		452
C 703.4
(3)
P 		193.9
(-2.1)
P 		194.1
(-2.1)
P 		108.8
(-3)
P 		497.6
(0.9)
P 		631.1
(2.3)
P 		595
avr 440.7
(1) 		252.3
(-1.4) 		132.2
(-3) 		174.1
(-2.5) 		419.3
(0.7) 		592.9
(3) 		461
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186498_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2645
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.17 NCBI
Target Description Y46G5A.17 /REP_DB=WormBase Gene ID /WP=CE28125 /TR=Q9U2F2 /GB=CAB60359.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064320 NCBI Caenorhabditis elegans Y46G5A.17 (Y46G5A.17) mRNA, complete cds. 11/11 None
GENEFINDER00000039032 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12788492:12796237:-1 11/11 None
Y46G5A.17.1 ENSEMBL cdna:known chromosome:CEL140:II:12788151:12796349:-1 gene:Y46G5A.17 11/11 None
Y46G5A.17.2 ENSEMBL cdna:known chromosome:CEL140:II:12788151:12796803:-1 gene:Y46G5A.17 11/11 None
Y46G5A.17.3 ENSEMBL cdna:known chromosome:CEL140:II:12788156:12796355:-1 gene:Y46G5A.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038997 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12788488-12796234(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cpt-1
Ensembl Y46G5A.17
Entrez Gene 174912 Entrez gene
SwissProt Q9U2F2 EMBL-EBI
WormBase CE36414 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582824_AT carnitine palmitoyltransferase 1A (liver) cfa
CANINE_2:CFA.101.1.S1_S_AT carnitine palmitoyltransferase 1A (liver) cfa
CANINE_2:CFAAFFX.16813.1.S1_AT carnitine palmitoyltransferase 1A (liver) cfa
CANINE_2:CFAAFFX.22979.1.S1_S_AT carnitine palmitoyltransferase 1A (liver) cfa
DROSOPHILA_2:1626147_S_AT mitochondrial carnitine palmitoyltransferase I dm
DROSGENOME1:154586_AT mitochondrial carnitine palmitoyltransferase I dm
CHICKEN:GGA.10294.1.S1_AT carnitine palmitoyltransferase 1A (liver) gga
CHICKEN:GGA.10416.1.S1_S_AT carnitine palmitoyltransferase 1A (liver) gga
CHICKEN:GGAAFFX.20100.1.S1_AT carnitine palmitoyltransferase 1A (liver) gga
HG-U133_PLUS_2:210688_S_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133A:210688_S_AT carnitine palmitoyltransferase 1A (liver) hs
HG-FOCUS:210688_S_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133A_2:210688_S_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U95AV2:35229_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133_PLUS_2:203634_S_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133A_2:203634_S_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133A:203634_S_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133_PLUS_2:210687_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133A:210687_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133A_2:210687_AT carnitine palmitoyltransferase 1A (liver) hs
HU35KSUBB:RC_H12318_AT carnitine palmitoyltransferase 1A (liver) hs
HUGENEFL:L39211_AT carnitine palmitoyltransferase 1A (liver) hs
U133_X3P:G4503020_3P_A_AT carnitine palmitoyltransferase 1A (liver) hs
U133_X3P:HS.259785.0.A2_3P_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133A_2:203633_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133_PLUS_2:203633_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U133A:203633_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U95B:52433_AT carnitine palmitoyltransferase 1A (liver) hs
HG-U95C:65676_AT Carnitine palmitoyltransferase 1A (liver) hs
HG-U95E:72001_I_AT Carnitine palmitoyltransferase 1A (liver) hs
HG-U95E:72002_R_AT Carnitine palmitoyltransferase 1A (liver) hs
HG-U95D:86915_AT Carnitine palmitoyltransferase 1A (liver) hs
HU35KSUBB:RC_AA115804_AT Carnitine palmitoyltransferase 1A (liver) hs
MOE430A:1434866_X_AT carnitine palmitoyltransferase 1a, liver mm
MOUSE430A_2:1434866_X_AT carnitine palmitoyltransferase 1a, liver mm
MOUSE430_2:1434866_X_AT carnitine palmitoyltransferase 1a, liver mm
MOUSE430A_2:1438156_X_AT carnitine palmitoyltransferase 1a, liver mm
MOE430A:1438156_X_AT carnitine palmitoyltransferase 1a, liver mm
MOUSE430_2:1438156_X_AT carnitine palmitoyltransferase 1a, liver mm
MU11KSUBA:AF017175_S_AT carnitine palmitoyltransferase 1a, liver mm
MG-U74AV2:93320_AT carnitine palmitoyltransferase 1a, liver mm
MOE430A:1460409_AT carnitine palmitoyltransferase 1a, liver mm
MOUSE430A_2:1460409_AT carnitine palmitoyltransferase 1a, liver mm
MOUSE430_2:1460409_AT carnitine palmitoyltransferase 1a, liver mm
RG-U34A:L07736_AT carnitine palmitoyltransferase 1, liver rn
RAE230A:1367836_AT carnitine palmitoyltransferase 1, liver rn
RAT230_2:1367836_AT carnitine palmitoyltransferase 1, liver rn
RAE230A:1386946_AT carnitine palmitoyltransferase 1, liver rn
RAT230_2:1386946_AT carnitine palmitoyltransferase 1, liver rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60359 Hypothetical protein Y46G5A.17 [Caenorhabditis elegans] ref|NP_496721.2| Y46G5A.17 [Caenorhabditis elegans] 0.0
blast CAE63438 Hypothetical protein CBG07886 [Caenorhabditis briggsae] 0.0
blast EAA13810 ENSANGP00000006147 [Anopheles gambiae str. PEST] ref|XP_319335.2| ENSANGP00000006147 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496721.2 3 53-75,79-97,104-126
Y46G5A.17.1 3 53-75,79-97,104-126
Y46G5A.17.2 3 53-75,79-97,104-126
Y46G5A.17.3 3 53-75,79-97,104-126
GENEFINDER00000039032 3 53-75,79-97,104-126
Sequence
Target Sequence 
>C. ELEGANS:186498_S_AT
taaattctcgctgacctacgaagcctcaatgacccgtctcttccgtgaaggacgtaccga
aactgtccgttcctgcactgtccaatcctcggatttcgttcgttcaatgctcgacgcctc
gaagacgcctcaagatcgcctccaactcctccgtaaagcatgcgacaagcatcaggagct
gtaccgagacgcgatgtgtggacaaggagtcgatcgtcatctcttcgctctctacgttat
caagagatatttggaagaggaatccccgtttttcgataatatcttcccaccgacatactt
gctctcaacttcccagactccgatgaatcagtgcgaagctgatgccaagggactttccaa
cgaagttcgcttgagattgatcactgccggaggtggattcggtccggtggctgatcgggg
ttacggtgtctcttatattgttgcaggggaagatactctgtctttccatatctctagcaa
gagatctgccgataatacgagctcccgtgaattccgtgaagagctcaagcgctcgctcaa
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATTCTCGCTGACCTACGAAGCC 551 639 1710 Antisense
GGATTTCGTTCGTTCAATGCTCGAC 286 509 1800 Antisense
CCAACTCCTCCGTAAAGCATGCGAC 287 277 1851 Antisense
TCAGGAGCTGTACCGAGACGCGATG 506 623 1881 Antisense
CTCTTCGCTCTCTACGTTATCAAGA 23 231 1930 Antisense
ACTTCCCAGACTCCGATGAATCAGT 507 103 2017 Antisense
TGGCTGATCGGGGTTACGGTGTCTC 622 543 2117 Antisense
TCTGTCTTTCCATATCTCTAGCAAG 678 607 2166 Antisense
GATCTGCCGATAATACGAGCTCCCG 626 417 2192 Antisense
GAGCTCCCGTGAATTCCGTGAAGAG 428 385 2208 Antisense
TGAAGAGCTCAAGCGCTCGCTCAAC 443 575 2226 Antisense
Sequence Source Affymetrix Proprietary Database