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[186495_at]

Description Y66H1A.1 /REP_DB=WormBase Gene ID /WP=CE22752 /TR=Q9TYJ6 /GB=AAD12856.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 05      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 39.4
(-1.8)
A 		11.2
(-3)
A 		11.1
(-3)
A 		158.3
(3)
A 		147
B 51.4
(-1.4)
A 		44.6
(-2.5)
A 		78.2
(3)
A 		41.8
(-3)
A 		36
C 82.9
(3)
A 		54.3
(0.1)
A 		24.4
(-3)
A 		76.9
(2.4)
A 		59
avr 57.9
(-0.7) 		36.7
(-3) 		37.9
(-2.9) 		92.3
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 84.9
(3)
A 		58.6
(1)
A 		72.1
(2.1)
A 		6.7
(-2.8)
A 		10.7
(-2.5)
A 		4
(-3)
A 		81
B 34.1
(2.1)
A 		5.2
(-3)
A 		39.2
(3)
A 		19.8
(-0.4)
A 		34.6
(2.2)
A 		36.4
(2.5)
A 		34
C 42.6
(-0.5)
A 		67
(1)
A 		6.9
(-2.7)
A 		99.5
(3)
A 		1.6
(-3)
A 		7.3
(-2.7)
A 		98
avr 53.9
(3) 		43.6
(1.4) 		39.4
(0.7) 		42
(1.1) 		15.6
(-3) 		15.9
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 14.3
(0.4)
A 		2.4
(-3)
A 		2.9
(-2.9)
A 		23.2
(3)
A 		21
B 16.4
(1.9)
A 		11
(-1.6)
A 		18.1
(3)
A 		8.9
(-3)
A 		9
C 27.4
(3)
A 		15.6
(-0.7)
A 		8.5
(-3)
A 		13
(-1.6)
A 		19
avr 19.4
(3) 		9.7
(-3) 		9.8
(-2.9) 		15
(0.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 15.6
(1.4)
A 		20.8
(3)
A 		15.7
(1.5)
A 		1.7
(-2.8)
A 		3.2
(-2.3)
A 		1
(-3)
A 		20
B 11.9
(1.9)
A 		1.7
(-3)
A 		9.5
(0.8)
A 		5.2
(-1.3)
A 		14.1
(3)
A 		13.6
(2.8)
A 		12
C 15.8
(1.6)
A 		20.4
(3)
A 		1.7
(-2.6)
A 		20
(2.9)
A 		0.5
(-3)
A 		2.4
(-2.4)
A 		20
avr 14.4
(3) 		14.3
(2.9) 		9
(-0.7) 		9
(-0.7) 		5.9
(-2.9) 		5.7
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10554
Sequence Type Exemplar sequence
Representative Public ID Y66H1A.1 NCBI
Target Description Y66H1A.1 /REP_DB=WormBase Gene ID /WP=CE22752 /TR=Q9TYJ6 /GB=AAD12856.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y66H1A.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y66H1A.1 Y66H1A.1 /REP_DB=WormBase Gene ID /WP=CE22752 /TR=Q9TYJ6 /GB=AAD12856.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071044 2/11 Cross Hyb Matching Probes None
GENEFINDER00000018654 2/11 Cross Hyb Matching Probes None
GENEFINDER00000023088 5/11 Cross Hyb Matching Probes None
ZK1225.8 2/11 Cross Hyb Matching Probes None
Y45F10B.7 3/11 Cross Hyb Matching Probes None
Y105C5A.18 3/11 Cross Hyb Matching Probes None
F52F10.1 2/11 Cross Hyb Matching Probes None
B0344.1 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:450258-450868(+) 19.76 75.09
Sequence
Target Sequence 
>C. ELEGANS:186495_AT
aaaattgacgtgtaggtctcatcaagacgcatcgagacatataaaatttgtaaaaagttc
agtgggaaaatttttcaagaaaaaaataattcaaaaatttagtactggggggagtggttt
cctgggtctcctgcacattttttccactaaagttttgcggaatgtatttttgattcatag
ccaaaacttgttttttttctatacatctgtctgtgtacaagatatagccctcaaatgtac
gtctccctttcgggaattttatgatgagtacaatgctaaagcggaatcgaaagacgactt
cctccagaaaattttcttccctacatcccagtttgaggtgtctcccgcatgcacaggtaa
cccgcgacaagcgagcgatgacttgcatgcaggccgcatgcaagtgaatgtagaaccaaa
aacacgcgtgtacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATTGACGTGTAGGTCTCATCAA 458 133 129 Antisense
GTAGGTCTCATCAAGACGCATCGAG 482 455 140 Antisense
TCATCAAGACGCATCGAGACATATA 564 619 147 Antisense
GTCTCCCTTTCGGGAATTTTATGAT 543 455 369 Antisense
GAGTACAATGCTAAAGCGGAATCGA 493 399 394 Antisense
CACAGGTAACCCGCGACAAGCGAGC 550 195 480 Antisense
GTAACCCGCGACAAGCGAGCGATGA 193 463 485 Antisense
AGCGAGCGATGACTTGCATGCAGGC 496 81 498 Antisense
AGCGATGACTTGCATGCAGGCCGCA 47 79 502 Antisense
GCAGGCCGCATGCAAGTGAATGTAG 27 311 517 Antisense
GTAGAACCAAAAACACGCGTGTACG 11 293 538 Antisense
Sequence Source Affymetrix Proprietary Database