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[186494_s_at] Protein tyrosine phosphatase (non-receptor class) /// ---

Description Y116A8C.37 /REP_DB=WormBase Gene ID /WP=CE24153 /TR=Q9U2S5 /GB=CAB55152.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 14      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 24.3
(1.2)
A 		7.9
(-2.9)
A 		7.3
(-3)
A 		31.7
(3)
A 		24
B 14
(-1.2)
A 		6.8
(-2.3)
A 		2.6
(-3)
A 		40.4
(3)
A 		38
C 29
(3)
A 		3.4
(-2.6)
A 		1.5
(-3)
A 		7.1
(-1.8)
A 		28
avr 22.4
(1.9) 		6
(-2.4) 		3.8
(-3) 		26.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 63.2
(1.4)
A 		5.2
(-3)
A 		30.5
(-1.1)
A 		61.6
(1.3)
A 		84.7
(3)
A 		69.4
(1.8)
A 		80
B 7.4
(-2.8)
A 		5.1
(-3)
A 		41.1
(-0.1)
A 		42.6
(0)
A 		34.5
(-0.6)
A 		79.9
(3)
A 		75
C 1.3
(-3)
A 		4.6
(-2.8)
A 		7.3
(-2.6)
A 		32.9
(-1)
A 		60.2
(0.7)
A 		97.8
(3)
A 		97
avr 24
(-1.5) 		5
(-3) 		26.3
(-1.3) 		45.7
(0.2) 		59.8
(1.2) 		82.4
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.9
(3)
A 		1.7
(-3)
A 		1.9
(-2.8)
A 		4.6
(-0.6)
A 		7
B 4.5
(-0.1)
A 		1.7
(-2.2)
A 		0.6
(-3)
A 		8.6
(3)
A 		8
C 9.6
(3)
A 		1
(-2.7)
A 		0.5
(-3)
A 		1.2
(-2.5)
A 		9
avr 7.7
(3) 		1.5
(-2.6) 		1
(-3) 		4.8
(0.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 11.6
(-0.5)
A 		1.9
(-3)
A 		6.6
(-1.8)
A 		15.6
(0.5)
A 		25.5
(3)
A 		16.9
(0.8)
A 		24
B 2.6
(-2.8)
A 		1.7
(-3)
A 		10
(-1.2)
A 		11.3
(-1)
A 		14
(-0.4)
A 		29.8
(3)
A 		28
C 0.5
(-3)
A 		1.4
(-2.8)
A 		1.8
(-2.8)
A 		6.6
(-1.9)
A 		19.5
(0.5)
A 		32.8
(3)
A 		32
avr 4.9
(-2.2) 		1.7
(-3) 		6.1
(-1.9) 		11.2
(-0.7) 		19.7
(1.4) 		26.5
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186494_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8633
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.37 NCBI
Target Description Y116A8C.37 /REP_DB=WormBase Gene ID /WP=CE24153 /TR=Q9U2S5 /GB=CAB55152.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070637(11), NM_066734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070637 NCBI Caenorhabditis elegans Y116A8C.37 (Y116A8C.37) mRNA, complete cds. 11/11 A 
NM_066734 NCBI Caenorhabditis elegans C15H7.3 (C15H7.3) mRNA, complete cds. 11/11 A 
SNAP00000039109 ENSEMBL cdna:SNAP chromosome:CEL140:III:9650350:9651659:-1 11/11 None
GENEFINDER00000039116 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9650350:9651659:-1 11/11 None
SNAP00000004109 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17130022:17131031:-1 11/11 None
GENEFINDER00000004188 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17130022:17131089:-1 11/11 None
C15H7.3 ENSEMBL cdna:known chromosome:CEL140:III:9650350:9651659:-1 gene:C15H7.3 11/11 A 
Y116A8C.37 ENSEMBL cdna:known chromosome:CEL140:IV:17130022:17131031:-1 gene:Y116A8C.37 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17130027-17131037(-) 94.43 100.0
Public Domain and Genome References
Gene Title Protein tyrosine phosphatase (non-receptor class)

Ensembl C15H7.3
Y116A8C.37
Entrez Gene 182639 Entrez gene
191006 Entrez gene
SwissProt P34337 EMBL-EBI
Q9U2S5 EMBL-EBI
WormBase CE00081 Wormbase
CE24153 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA80125 Hypothetical protein C15H7.3 [Caenorhabditis elegans] ref|NP_499135.1| C15H7.3 [Caenorhabditis elegans] sp|P34337|YK13_CAEEL Hypothetical protein C15H7.3 in chromosome III 1.0E-178
blast CAB55152 Hypothetical protein Y116A8C.37 [Caenorhabditis elegans] ref|NP_503038.1| Y116A8C.37 [Caenorhabditis elegans] 1.0E-142
blast CAA80125 Hypothetical protein C15H7.3 [Caenorhabditis elegans] ref|NP_499135.1| C15H7.3 [Caenorhabditis elegans] sp|P34337|YK13_CAEEL Hypothetical protein C15H7.3 in chromosome III 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.4E-27
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-46
Sequence
Target Sequence 
>C. ELEGANS:186494_S_AT
accgacaacttcaaaacgccgatggactcgtgcccttctttcaagaacaacatgcacaaa
atacgagctccggattgtccaattccggaagaaaagctcgtgaagttggcgaatggaccg
gagagtttcatatgtgctgccaaaatcacagttccggatttcaaccgaactatgatcctg
actcaagtccctgatctgtcacgctcgcctgatactgcagacttctggagaatgatccac
caggagagcatagtttcagtggttattgcagttatgcctctggaggtgacactccaacaa
atcctgcctcttctgagcggaacatactccacttatggaaaaatgttcgtcaacaataag
aaggttgaatcagctgttgggatgactgaatattgtttggaaattcttcccgatgggtgc
tcaaactcgttgctcactacagtttaccacatgcacaactggcgtcagaaaagaggattg
gaggttgtgacagattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGACAACTTCAAAACGCCGATGG 591 85 280 Antisense
TTCAAAACGCCGATGGACTCGTGCC 599 685 289 Antisense
ACTCGTGCCCTTCTTTCAAGAACAA 530 99 305 Antisense
AACATGCACAAAATACGAGCTCCGG 222 137 328 Antisense
AAAATACGAGCTCCGGATTGTCCAA 493 129 337 Antisense
CGGAGAGTTTCATATGTGCTGCCAA 325 243 398 Antisense
ATCACAGTTCCGGATTTCAACCGAA 85 27 424 Antisense
TCCGGATTTCAACCGAACTATGATC 281 595 432 Antisense
GGAGAATGATCCACCAGGAGAGCAT 657 519 506 Antisense
GCCTCTTCTGAGCGGAACATACTCC 9 283 585 Antisense
GAGGATTGGAGGTTGTGACAGATTT 452 403 752 Antisense
Sequence Source Affymetrix Proprietary Database