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[186493_at]

Description Y116A8C.37 /REP_DB=WormBase Gene ID /WP=CE24153 /TR=Q9U2S5 /GB=CAB55152.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 63      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 4.3
(-3)
A 		5.5
(-2.3)
A 		4.7
(-2.8)
A 		14
(3)
A 		10
B 7.1
(-1.9)
A 		1.8
(-3)
A 		31.9
(3)
A 		2.1
(-2.9)
A 		30
C 18.6
(3)
A 		6
(-1.5)
A 		1.8
(-3)
A 		2.6
(-2.7)
A 		17
avr 10
(1) 		4.4
(-3) 		12.8
(3) 		6.2
(-1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.3
(-3)
A 		1.7
(-2.9)
A 		18.3
(1.7)
A 		5.3
(-1.9)
A 		5.4
(-1.9)
A 		22.9
(3)
A 		22
B 1.3
(-3)
A 		4.2
(-2.1)
A 		1.7
(-2.9)
A 		7.7
(-1)
A 		20.5
(3)
A 		11
(0)
A 		19
C 2.6
(-3)
A 		18.7
(3)
A 		2.8
(-2.9)
A 		5.8
(-1.8)
A 		6.8
(-1.4)
A 		18.3
(2.9)
A 		16
avr 1.7
(-3) 		8.2
(-0.5) 		7.6
(-0.7) 		6.3
(-1.2) 		10.9
(0.5) 		17.4
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.5
(-1)
A 		1.2
(-3)
A 		1.2
(-3)
A 		2.1
(3)
A 		1
B 2.3
(-1.4)
A 		0.5
(-2.9)
A 		7.4
(3)
A 		0.4
(-3)
A 		7
C 6.1
(3)
A 		1.7
(-1.6)
A 		0.6
(-2.8)
A 		0.4
(-3)
A 		6
avr 3.3
(3) 		1.1
(-2.7) 		3.1
(2.5) 		1
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.6
(-2.6)
A 		4
(1.2)
A 		1.3
(-1.8)
A 		1.6
(-1.4)
A 		5.6
(3)
A 		5
B 0.5
(-2.9)
A 		1.4
(-2.2)
A 		0.4
(-3)
A 		2
(-1.8)
A 		8.3
(3)
A 		4.1
(-0.2)
A 		8
C 0.9
(-2.8)
A 		5.7
(2.6)
A 		0.7
(-3)
A 		1.2
(-2.4)
A 		2.2
(-1.3)
A 		6.1
(3)
A 		5
avr 0.5
(-3) 		2.6
(-0.4) 		1.7
(-1.5) 		1.5
(-1.8) 		4
(1.4) 		5.3
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8633
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.37 NCBI
Target Description Y116A8C.37 /REP_DB=WormBase Gene ID /WP=CE24153 /TR=Q9U2S5 /GB=CAB55152.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070637(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070637 NCBI Caenorhabditis elegans Y116A8C.37 (Y116A8C.37) mRNA, complete cds. 11/11 A 
SNAP00000004109 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17130022:17131031:-1 11/11 None
GENEFINDER00000004188 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17130022:17131089:-1 11/11 None
Y116A8C.37 ENSEMBL cdna:known chromosome:CEL140:IV:17130022:17131031:-1 gene:Y116A8C.37 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17130027-17131037(-) 94.43 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.37
Entrez Gene 191006 Entrez gene
SwissProt Q9U2S5 EMBL-EBI
WormBase CE24153 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55152 Hypothetical protein Y116A8C.37 [Caenorhabditis elegans] ref|NP_503038.1| Y116A8C.37 [Caenorhabditis elegans] 1.0E-142
blast CAA80125 Hypothetical protein C15H7.3 [Caenorhabditis elegans] ref|NP_499135.1| C15H7.3 [Caenorhabditis elegans] sp|P34337|YK13_CAEEL Hypothetical protein C15H7.3 in chromosome III 1.0E-110
blast CAE71191 Hypothetical protein CBG18048 [Caenorhabditis briggsae] 3.0E-79
blast CAA80125 Hypothetical protein C15H7.3 [Caenorhabditis elegans] ref|NP_499135.1| C15H7.3 [Caenorhabditis elegans] sp|P34337|YK13_CAEEL Hypothetical protein C15H7.3 in chromosome III 7.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.4E-27
Sequence
Target Sequence 
>C. ELEGANS:186493_AT
gaagttggcgaatggaccggagagtttcatatgtgctgccaaaatcacagttccggattt
caaccgaactatgatcctgactcaagtccctgatctgtcacgctcgcctgatactgcaga
cttctggagaatgatccaccaggagagcatagtttcagtggttattgcagttatgcctct
ggaggtgacactccaacaaatcctgcctcttctgagcggaacatactccacttatggaaa
aatgttcgtcaacaataagaaggttgaatcagctgttgggatgactgaatattgtttgga
aattcttcccgatgggtgctcaaactcgttgctcactacagtttaccacatgcacaactg
gcgtcagaaaagaggattggaggttgtgacagatttagtgactactatggagaaggttat
gaaagttaatgagaactctgttctgatgagcatgaatggtactggaagagccggaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTGGCGAATGGACCGGAGAGT 516 337 381 Antisense
TCGCCTGATACTGCAGACTTCTGGA 347 599 484 Antisense
GAGCATAGTTTCAGTGGTTATTGCA 36 389 525 Antisense
ATGCCTCTGGAGGTGACACTCCAAC 466 41 553 Antisense
GAGGTGACACTCCAACAAATCCTGC 11 403 562 Antisense
GGTTGAATCAGCTGTTGGGATGACT 122 507 642 Antisense
AATTCTTCCCGATGGGTGCTCAAAC 180 175 681 Antisense
GTTTACCACATGCACAACTGGCGTC 433 443 721 Antisense
GGTTGTGACAGATTTAGTGACTACT 347 507 762 Antisense
GAGAACTCTGTTCTGATGAGCATGA 108 393 811 Antisense
AATGGTACTGGAAGAGCCGGAATTT 19 159 835 Antisense
Sequence Source Affymetrix Proprietary Database