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[186492_s_at]

Description F15E11.14 /REP_DB=WormBase Gene ID /WP=CE16999 /TR=O44604 /GB=AAB94198.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 06      6grp_total > 12      4grp_total > 58      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15135
1 2 3 4 range
A 7218.7
(-0.2)
P 		15376.3
(3)
P 		14699.4
(2.7)
P 		241
(-3)
P 		15135
B 6425.3
(-0.6)
P 		15347.7
(3)
P 		15364.6
(3)
P 		257.8
(-3)
P 		15107
C 7233.3
(-0.2)
P 		15186.2
(3)
P 		14360.4
(2.7)
P 		353.7
(-3)
P 		14833
avr 6959.1
(-0.3) 		15303.4
(3) 		14808.1
(2.8) 		284.2
(-3) 		15019

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17261
1 2 3 4 5 6 range
A 9107.4
(0.1)
P 		16459.8
(3)
P 		11095.1
(0.9)
P 		7881.7
(-0.4)
P 		6213.1
(-1)
P 		1191.5
(-3)
P 		15268
B 11052.9
(0.8)
P 		16943.5
(3)
P 		10124.4
(0.4)
P 		6355.1
(-1)
P 		6697.8
(-0.9)
P 		990
(-3)
P 		15954
C 11788
(0.7)
P 		18251
(3)
P 		9557.9
(-0.1)
P 		7937.6
(-0.6)
P 		7456.1
(-0.8)
P 		1225.8
(-3)
P 		17025
avr 10649.4
(0.5) 		17218.1
(3) 		10259.1
(0.4) 		7391.5
(-0.7) 		6789
(-0.9) 		1135.8
(-3) 		16082
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4970
1 2 3 4 range
A 2628.3
(1.1)
P 		3337.8
(2.2)
P 		3842.7
(3)
P 		35.3
(-3)
P 		3807
B 2049
(0.2)
P 		3790.5
(3)
P 		3560.3
(2.6)
P 		54.9
(-3)
P 		3736
C 2394.4
(-0.2)
P 		4366.1
(2.2)
P 		5005
(3)
P 		59.6
(-3)
P 		4945
avr 2357.2
(0.4) 		3831.5
(2.6) 		4136
(3) 		49.9
(-3) 		4086

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5564
1 2 3 4 5 6 range
A 1678.9
(-1.5)
P 		5853.9
(3)
P 		2416.3
(-0.7)
P 		1999
(-1.2)
P 		1874.8
(-1.3)
P 		290.1
(-3)
P 		5564
B 3845.9
(1)
P 		5639.8
(3)
P 		2458.5
(-0.6)
P 		1683.3
(-1.5)
P 		2721.2
(-0.3)
P 		369.2
(-3)
P 		5271
C 4369.3
(1.6)
P 		5568.9
(3)
P 		2432.6
(-0.6)
P 		1596.3
(-1.6)
P 		2412.7
(-0.7)
P 		410.4
(-3)
P 		5159
avr 3298
(0.3) 		5687.5
(3) 		2435.8
(-0.7) 		1759.5
(-1.4) 		2336.2
(-0.8) 		356.6
(-3) 		5331
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186492_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15155
Sequence Type Exemplar sequence
Representative Public ID F15E11.14 NCBI
Target Description F15E11.14 /REP_DB=WormBase Gene ID /WP=CE16999 /TR=O44604 /GB=AAB94198.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071237(11), NM_071239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071237 NCBI Caenorhabditis elegans F15E11.14 (F15E11.14) mRNA, complete cds. 11/11 None
NM_071239 NCBI Caenorhabditis elegans F15E11.1 (F15E11.1) mRNA, complete cds. 11/11 None
SNAP00000041491 ENSEMBL cdna:SNAP chromosome:CEL140:V:2322842:2323352:1 11/11 None
SNAP00000041495 ENSEMBL cdna:SNAP chromosome:CEL140:V:2329272:2329782:-1 11/11 None
GENEFINDER00000041503 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2329272:2329782:-1 11/11 None
GENEFINDER00000041509 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2322842:2323352:1 11/11 None
F15E11.14 ENSEMBL cdna:known chromosome:CEL140:V:2322842:2323352:1 gene:F15E11.14 11/11 None
F15E11.1 ENSEMBL cdna:known chromosome:CEL140:V:2329272:2329782:-1 gene:F15E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2322841-2323352(+) 100.0 100.0
chrV:2329271-2329782(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F15E11.14
F15E11.1
Entrez Gene 178710 Entrez gene
178713 Entrez gene
SwissProt O44604 EMBL-EBI
WormBase CE16999 Wormbase
CE16999 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503640 F15E11.1 [Caenorhabditis elegans] ref|NP_503638.1| F15E11.14 [Caenorhabditis elegans] gb|AAK71362.1| Hypothetical protein F15E11.14 [Caenorhabditis elegans] gb|AAB94198.1| Hypothetical protein F15E11.1 [Caenorhabditis elegans] 1.0E-87
blast F88970 protein F15E11.12 [imported] - Caenorhabditis elegans 2.0E-87
Sequence
Target Sequence 
>C. ELEGANS:186492_S_AT
ggcaagcgacgaaccatcaggtgtgacagaacaatgggccaaagtggatattgagaacaa
aagtgaccatgtgttcaagttccaagtgcttcatcagtataccggcaatgcattggaagc
ttcaaaatgggtgaaattggagccaaaccaaagtgcccaaattctggagaaagttcacta
caacactggaccatttacaactggtactgataattggaaggttcatggaatcaaacagat
tgagacaaacttagacgataagaatggagtggttgatggaaaggttcgtattctcggtga
agcttggcgtagtggacatccagatggggctgattggaaaaaacacactttgagagtaga
agaccatgcccaaactacagtaatcaaggttctcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAAGCGACGAACCATCAGGTGTG 705 533 15 Antisense
GACCATGTGTTCAAGTTCCAAGTGC 200 383 79 Antisense
CCAAGTGCTTCATCAGTATACCGGC 622 275 96 Antisense
ATACCGGCAATGCATTGGAAGCTTC 530 23 113 Antisense
GGAGCCAAACCAAAGTGCCCAAATT 686 521 153 Antisense
GTTCACTACAACACTGGACCATTTA 499 443 187 Antisense
AAGGTTCGTATTCTCGGTGAAGCTT 483 159 295 Antisense
GGTGAAGCTTGGCGTAGTGGACATC 598 499 310 Antisense
GTGGACATCCAGATGGGGCTGATTG 693 489 326 Antisense
AGAAGACCATGCCCAAACTACAGTA 202 75 372 Antisense
ACTACAGTAATCAAGGTTCTCGAGA 354 99 388 Antisense
Sequence Source Affymetrix Proprietary Database