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[186491_at]

Description ZK945.7 /REP_DB=WormBase Gene ID /WP=CE01738 /TR=SW:Q09383 /GB=CAA88440.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 35      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 58
(-0.2)
A 		90.5
(3)
A 		30
(-3)
A 		80.3
(2)
A 		61
B 14
(-3)
A 		31.1
(-1.1)
A 		37.1
(-0.5)
A 		68.4
(3)
A 		54
C 68.6
(2.1)
A 		75.8
(3)
A 		28.9
(-3)
A 		34.2
(-2.3)
A 		47
avr 46.9
(-0.4) 		65.8
(3) 		32
(-3) 		61
(2.1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 57.2
(-2.1)
A 		9.4
(-3)
A 		58.1
(-2.1)
A 		73.3
(-1.8)
A 		223.2
(0.9)
P 		342.3
(3)
P 		333
B 61.4
(-1.9)
A 		53.5
(-2.1)
A 		22.7
(-3)
A 		63.8
(-1.8)
A 		207.6
(2.4)
P 		228.5
(3)
P 		206
C 35.6
(-3)
A 		37.8
(-2.9)
A 		41.1
(-2.9)
A 		62.2
(-2.4)
A 		291.2
(3)
P 		251.6
(2.1)
P 		256
avr 51.4
(-2.6) 		33.6
(-3) 		40.6
(-2.8) 		66.4
(-2.2) 		240.7
(2.2) 		274.1
(3) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21.1
(3)
A 		19.6
(2.3)
A 		7.9
(-3)
A 		11.8
(-1.2)
A 		13
B 4.5
(-3)
A 		7.7
(-1.1)
A 		8.6
(-0.6)
A 		14.6
(3)
A 		10
C 22.7
(3)
A 		21.8
(2.7)
A 		10.1
(-1.5)
A 		5.8
(-3)
A 		17
avr 16.1
(2.8) 		16.4
(3) 		8.9
(-3) 		10.7
(-1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 10.5
(-2.5)
A 		3.3
(-3)
A 		12.7
(-2.3)
A 		18.6
(-1.9)
A 		67.4
(1.8)
P 		83.3
(3)
P 		80
B 21.4
(-1.8)
A 		17.8
(-2.1)
A 		5.5
(-3)
A 		16.9
(-2.1)
A 		84.3
(2.9)
P 		85.2
(3)
P 		80
C 13.2
(-2.8)
A 		11.5
(-2.9)
A 		10.5
(-3)
A 		12.5
(-2.9)
A 		94.2
(3)
P 		84.2
(2.3)
P 		84
avr 15
(-2.6) 		10.9
(-2.9) 		9.6
(-3) 		16
(-2.5) 		82
(2.8) 		84.2
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2800
Sequence Type Exemplar sequence
Representative Public ID ZK945.7 NCBI
Target Description ZK945.7 /REP_DB=WormBase Gene ID /WP=CE01738 /TR=SW:Q09383 /GB=CAA88440.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063781 NCBI Caenorhabditis elegans ZK945.7 (ZK945.7) mRNA, complete cds. 11/11 None
SNAP00000015337 ENSEMBL cdna:SNAP chromosome:CEL140:II:10107433:10108315:-1 11/11 None
GENEFINDER00000015341 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10107433:10108315:-1 11/11 None
ZK945.7 ENSEMBL cdna:known chromosome:CEL140:II:10107430:10108319:-1 gene:ZK945.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10107429-10108312(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK945.7
Entrez Gene 174575 Entrez gene
SwissProt Q09383 EMBL-EBI
WormBase CE01738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88440 Hypothetical protein ZK945.7 [Caenorhabditis elegans] ref|NP_496182.1| ZK945.7 [Caenorhabditis elegans] sp|Q09383|YS87_CAEEL Hypothetical protein ZK945.7 in chromosome II 1.0E-139
blast CAE67805 Hypothetical protein CBG13383 [Caenorhabditis briggsae] 1.0E-63
Sequence
Target Sequence 
>C. ELEGANS:186491_AT
ttcgatctacccaatcccaaaatcagaaacaaatgtgtcagctagcgaagggttccagcc
atgtcaagatatcaatcaattcaatttgtccgtttactctgctccaaaatccgagacccc
agtgaccatgaatgagaagttcgagcggtgcaaagacttgatgaacgttcttgactactc
tgtctactcaatgccaccatcagaagcaaatgttacaatgaatgttgcaagcttctcgga
gtacactgcccttgcctcggagaccaacgtcacaatggctgatgttctcaagaacgttgc
tcaggatttggcgtcagagcacactgcaaaatcagctcatccaacattcgacaccaccgc
ctacgtagagcgccttcaagccgagctcgggattccggatagcaaagtgattggattgga
gtgcagcaatttttcgaatgcgaagatcattgattcaattgaatgccttcatcagttgga
caaattccaaccaatcccggtggatttcgatcagaatcctgattttggaaaaactgccaa
atctgtggaaagctacctcttgcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGATCTACCCAATCCCAAAATCA 701 695 162 Antisense
AGGGTTCCAGCCATGTCAAGATATC 627 57 210 Antisense
ATTCAATTTGTCCGTTTACTCTGCT 213 13 240 Antisense
TACTCTGCTCCAAAATCCGAGACCC 89 647 256 Antisense
GAGACCCCAGTGACCATGAATGAGA 113 395 274 Antisense
GATGAACGTTCTTGACTACTCTGTC 122 413 321 Antisense
TGCAAGCTTCTCGGAGTACACTGCC 682 575 387 Antisense
TTGCCTCGGAGACCAACGTCACAAT 189 701 413 Antisense
GGATTTGGCGTCAGAGCACACTGCA 610 509 465 Antisense
AGCCGAGCTCGGGATTCCGGATAGC 679 81 540 Antisense
ATCTGTGGAAAGCTACCTCTTGCGT 665 33 702 Antisense
Sequence Source Affymetrix Proprietary Database