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[186490_at]

Description R06F6.7 /REP_DB=WormBase Gene ID /WP=CE01623 /TR=SW:Q09416 /GB=CAA86777.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 50      4grp_high_8_8 > 41      6grp_highest_nonorm > 71      6grp_total > 09      4grp_total > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 914
1 2 3 4 range
A 1119.9
(3)
P 		478
(-1.2)
P 		348.8
(-2.1)
P 		206.4
(-3)
P 		914
B 1013.2
(3)
P 		463.2
(-1.1)
P 		264.6
(-2.6)
P 		209.6
(-3)
P 		804
C 1062.1
(3)
P 		471.3
(-1.2)
P 		308.2
(-2.4)
P 		221.3
(-3)
P 		841
avr 1065.1
(3) 		470.8
(-1.2) 		307.2
(-2.3) 		212.4
(-3) 		853

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 377.6
(-0.1)
P 		357.1
(-0.7)
P 		324.9
(-1.7)
P 		484.4
(3)
P 		326.8
(-1.6)
P 		279
(-3)
P 		205
B 373.7
(1.9)
P 		378.8
(2.1)
P 		392.4
(2.6)
P 		366.6
(1.6)
P 		403.7
(3)
P 		241
(-3)
P 		163
C 535.1
(3)
P 		326.3
(-2)
P 		455.7
(1.1)
P 		342.3
(-1.6)
P 		335.1
(-1.8)
P 		286.2
(-3)
P 		249
avr 428.8
(3) 		354.1
(0.2) 		391
(1.6) 		397.8
(1.8) 		355.2
(0.2) 		268.7
(-3) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 407.8
(3)
P 		103.8
(-1.8)
P 		91.2
(-2)
P 		30.2
(-3)
P 		378
B 323.1
(3)
P 		114.4
(-1.5)
P 		61.3
(-2.6)
P 		44.7
(-3)
P 		278
C 351.6
(3)
P 		135.5
(-1.1)
P 		107.4
(-1.7)
P 		37.3
(-3)
P 		314
avr 360.8
(3) 		117.9
(-1.5) 		86.6
(-2.1) 		37.4
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 69.6
(-2.8)
P 		127
(3)
P 		70.8
(-2.7)
P 		122.8
(2.6)
P 		98.6
(0.1)
P 		67.9
(-3)
P 		59
B 130
(0.2)
P 		126.1
(-0.1)
P 		95.3
(-2.6)
P 		97.1
(-2.4)
P 		164
(3)
P 		89.9
(-3)
P 		74
C 198.3
(3)
P 		99.6
(-1.6)
P 		116
(-0.8)
P 		68.8
(-3)
P 		108.4
(-1.2)
P 		95.8
(-1.7)
P 		130
avr 132.6
(3) 		117.6
(1.1) 		94
(-1.8) 		96.2
(-1.5) 		123.7
(1.9) 		84.5
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2613
Sequence Type Exemplar sequence
Representative Public ID R06F6.7 NCBI
Target Description R06F6.7 /REP_DB=WormBase Gene ID /WP=CE01623 /TR=SW:Q09416 /GB=CAA86777.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063926 NCBI Caenorhabditis elegans R06F6.7 (R06F6.7) mRNA, complete cds. 11/11 None
SNAP00000015433 ENSEMBL cdna:SNAP chromosome:CEL140:II:10811672:10812007:1 9/11 None
GENEFINDER00000015446 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10811672:10812007:1 9/11 None
R06F6.7 ENSEMBL cdna:known chromosome:CEL140:II:10810977:10812007:1 gene:R06F6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10810983-10812004(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06F6.7
Entrez Gene 187643 Entrez gene
SwissProt Q09416 EMBL-EBI
WormBase CE01623 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86777 Hypothetical protein R06F6.7 [Caenorhabditis elegans] ref|NP_496327.1| R06F6.7 [Caenorhabditis elegans] sp|Q09416|YRM7_CAEEL Hypothetical protein R06F6.7 in chromosome II precursor 5.0E-32
blast CAA86777 Hypothetical protein R06F6.7 [Caenorhabditis elegans] ref|NP_496327.1| R06F6.7 [Caenorhabditis elegans] sp|Q09416|YRM7_CAEEL Hypothetical protein R06F6.7 in chromosome II precursor 4.0E-31
blast CAE59612 Hypothetical protein CBG03021 [Caenorhabditis briggsae] 7.0E-11
blast CAE59612 Hypothetical protein CBG03021 [Caenorhabditis briggsae] 2.0E-9
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496327.1 1 4-21
R06F6.7 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:186490_AT
tgcacaagccggcaaatcttctgaaagcgatgagtctcgtcgtcgcccatcaaaatcctc
cgaatcttccgacagtgactcaaagtcttctgattccgattccagctcttctgaagagag
ctctggagatgttccatccgaggctccaaataccgattccacccctgtcgaaatcctagc
tgcagcaaaaccagattccgggatccttctcggccccggtgacaatcgtgtgaagcgaga
tgggcttccgagcttctacgatatccgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACAAGCCGGCAAATCTTCTGAA 291 575 63 Antisense
GAAAGCGATGAGTCTCGTCGTCGCC 407 359 85 Antisense
ATCAAAATCCTCCGAATCTTCCGAC 198 27 111 Antisense
CCGAATCTTCCGACAGTGACTCAAA 536 263 122 Antisense
AAGTCTTCTGATTCCGATTCCAGCT 1 159 145 Antisense
TTCCATCCGAGGCTCCAAATACCGA 325 699 194 Antisense
CCCTGTCGAAATCCTAGCTGCAGCA 328 259 225 Antisense
GCAAAACCAGATTCCGGGATCCTTC 215 319 247 Antisense
GCCCCGGTGACAATCGTGTGAAGCG 630 285 275 Antisense
GAAGCGAGATGGGCTTCCGAGCTTC 650 343 294 Antisense
TTCCGAGCTTCTACGATATCCGCAA 268 699 308 Antisense
Sequence Source Affymetrix Proprietary Database