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[186489_s_at]

Description ZK945.6 /REP_DB=WormBase Gene ID /WP=CE01737 /TR=SW:Q09382 /GB=CAA88439.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.7
(-3)
A 		5.4
(-2.4)
A 		11.7
(-1)
A 		29.5
(3)
A 		27
B 10.6
(-3)
A 		33.6
(3)
A 		31.8
(2.5)
A 		31.7
(2.5)
A 		23
C 11.7
(-0.8)
A 		17.8
(2.8)
A 		8.1
(-3)
A 		18.1
(3)
A 		10
avr 8.3
(-3) 		18.9
(0.5) 		17.2
(-0) 		26.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 3.4
(-3)
A 		5.3
(-2.9)
A 		13.8
(-2.3)
A 		5
(-2.9)
A 		44.4
(-0.1)
A 		87
(3)
A 		84
B 7
(-3)
A 		10.8
(-2.8)
A 		19.8
(-2.3)
A 		11.4
(-2.8)
A 		49.4
(-0.7)
A 		117.5
(3)
A 		111
C 4.2
(-2.9)
A 		11.8
(-2.6)
A 		2.8
(-3)
A 		8.7
(-2.8)
A 		12.3
(-2.6)
A 		149.2
(3)
P 		146
avr 4.9
(-3) 		9.3
(-2.8) 		12.1
(-2.6) 		8.4
(-2.8) 		35.4
(-1.4) 		117.9
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1
(-3)
A 		1.2
(-2.6)
A 		3.1
(0.8)
A 		4.3
(3)
A 		3
B 3.4
(-3)
A 		8.3
(3)
A 		7.4
(1.9)
A 		6.8
(1.2)
A 		5
C 3.9
(-0.1)
A 		5.1
(3)
A 		2.8
(-3)
A 		3
(-2.5)
A 		2
avr 2.8
(-3) 		4.9
(3) 		4.4
(1.6) 		4.7
(2.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.9
(-2.6)
A 		3
(-2.3)
A 		1.3
(-2.8)
A 		13.4
(0.7)
A 		21.2
(3)
A 		21
B 2.4
(-3)
A 		3.6
(-2.8)
A 		4.8
(-2.7)
A 		3
(-2.9)
A 		20.1
(-0.4)
A 		43.8
(3)
A 		41
C 1.5
(-2.9)
A 		3.6
(-2.6)
A 		0.7
(-3)
A 		1.8
(-2.9)
A 		4
(-2.6)
A 		49.9
(3)
P 		49
avr 1.5
(-3) 		3
(-2.8) 		2.8
(-2.8) 		2
(-2.9) 		12.5
(-1.2) 		38.3
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186489_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2659
Sequence Type Exemplar sequence
Representative Public ID ZK945.6 NCBI
Target Description ZK945.6 /REP_DB=WormBase Gene ID /WP=CE01737 /TR=SW:Q09382 /GB=CAA88439.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027366(11), NM_001027367(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027366 NCBI Caenorhabditis elegans ZK945.6a (ZK945.6) mRNA, complete cds. 11/11 None
NM_001027367 NCBI Caenorhabditis elegans ZK945.6b (ZK945.6) mRNA, complete cds. 10/11 None
SNAP00000015336 ENSEMBL cdna:SNAP chromosome:CEL140:II:10106022:10106813:-1 11/11 None
GENEFINDER00000015346 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10106022:10106888:-1 11/11 None
ZK945.6a ENSEMBL cdna:known chromosome:CEL140:II:10106022:10106813:-1 gene:ZK945.6 11/11 None
ZK945.6b ENSEMBL cdna:known chromosome:CEL140:II:10106022:10106813:-1 gene:ZK945.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10106018-10106810(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK945.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88439 Hypothetical protein ZK945.6a [Caenorhabditis elegans] ref|NP_001022537.1| ZK945.6a [Caenorhabditis elegans] sp|Q09382|YS86_CAEEL Hypothetical protein ZK945.6 in chromosome II 1.0E-121
blast CAE48820 Hypothetical protein ZK945.6b [Caenorhabditis elegans] ref|NP_001022538.1| ZK945.6b [Caenorhabditis elegans] 1.0E-120
blast CAE48820 Hypothetical protein ZK945.6b [Caenorhabditis elegans] ref|NP_001022538.1| ZK945.6b [Caenorhabditis elegans] 1.0E-118
blast CAA88439 Hypothetical protein ZK945.6a [Caenorhabditis elegans] ref|NP_001022537.1| ZK945.6a [Caenorhabditis elegans] sp|Q09382|YS86_CAEEL Hypothetical protein ZK945.6 in chromosome II 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:186489_S_AT
gtacatcggtctgcacagctgtatcattggagacagtggcacaaaagttggatgcctatg
cagatccttctttgaatactcagatgtctttcagtacagcatcggatttgagttctatgg
aacaagattatgttaaagcttcagatgatcctttcgacctcaatcatcaaccgtcgccgc
tccaagtctggcgtgatcaaggcaaaatcaccggatttcaaatgatgtgtgatgatcaga
aggttactgtagttgattctctggagtgcttagctcaatcggagcaacatttggaaccag
tttacttcgatccacgtgtcaaccttgctattccgtgcccgccagatgattttgagattc
ttgaagactatggttcaacatccaatgcatcagtcaattcggatgacgcttcaaccgcag
aacttggtccgacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATCGGTCTGCACAGCTGTATC 142 461 182 Antisense
TGCCTATGCAGATCCTTCTTTGAAT 231 581 234 Antisense
AAGCTTCAGATGATCCTTTCGACCT 288 151 317 Antisense
CTTTCGACCTCAATCATCAACCGTC 161 223 332 Antisense
CCGCTCCAAGTCTGGCGTGATCAAG 113 263 358 Antisense
GATTCTCTGGAGTGCTTAGCTCAAT 36 433 436 Antisense
AACCAGTTTACTTCGATCCACGTGT 666 145 476 Antisense
CACGTGTCAACCTTGCTATTCCGTG 523 199 494 Antisense
CGTGCCCGCCAGATGATTTTGAGAT 463 245 515 Antisense
AATTCGGATGACGCTTCAACCGCAG 569 177 577 Antisense
TCAACCGCAGAACTTGGTCCGACGT 592 631 592 Antisense
Sequence Source Affymetrix Proprietary Database