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[186488_at]

Description T15H9.4 /REP_DB=WormBase Gene ID /WP=CE01667 /TR=SW:Q09354 /GB=CAA87417.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 15.2
(-2.2)
A 		66.2
(3)
A 		23.9
(-1.3)
A 		7.4
(-3)
A 		59
B 62.2
(3)
A 		21.1
(-1.8)
A 		11
(-3)
A 		58.1
(2.5)
A 		51
C 8.1
(-3)
A 		16
(0.4)
A 		12
(-1.3)
A 		21.9
(3)
A 		14
avr 28.5
(1.1) 		34.4
(3) 		15.6
(-3) 		29.1
(1.3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 13
(-2.6)
A 		15.3
(-2.4)
A 		11.8
(-2.8)
A 		16.1
(-2.3)
A 		57.6
(3)
A 		10.2
(-3)
A 		47
B 29.2
(-0.4)
A 		13.6
(-2.2)
A 		16.3
(-1.9)
A 		6.6
(-3)
A 		53.6
(2.5)
A 		58.2
(3)
A 		52
C 7.2
(-3)
A 		10.8
(-2.1)
A 		19.4
(0.2)
A 		23.9
(1.4)
A 		30.2
(3)
A 		30.1
(3)
A 		23
avr 16.5
(-2.4) 		13.2
(-3) 		15.8
(-2.5) 		15.5
(-2.6) 		47.1
(3) 		32.8
(0.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 5.5
(-1)
A 		14.4
(3)
A 		6.2
(-0.7)
A 		1.1
(-3)
A 		13
B 19.8
(3)
A 		5.2
(-2.1)
A 		2.6
(-3)
A 		12.4
(0.4)
A 		17
C 2.7
(-3)
A 		4.6
(3)
A 		4.2
(1.7)
A 		3.7
(0.2)
A 		2
avr 9.3
(3) 		8.1
(1.6) 		4.3
(-3) 		5.7
(-1.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.4
(-3)
A 		5.4
(-1.8)
A 		2.6
(-2.9)
A 		4.1
(-2.3)
A 		17.4
(3)
A 		2.5
(-3)
A 		15
B 10.2
(-0.5)
A 		4.5
(-2.2)
A 		4
(-2.3)
A 		1.8
(-3)
A 		21.8
(3)
A 		21.7
(3)
A 		20
C 2.7
(-3)
A 		3.3
(-2.5)
A 		4.9
(-1.2)
A 		4.8
(-1.3)
A 		9.8
(2.8)
A 		10.1
(3)
A 		7
avr 5.1
(-2.3) 		4.4
(-2.6) 		3.8
(-2.9) 		3.6
(-3) 		16.3
(3) 		11.4
(0.7) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2931
Sequence Type Exemplar sequence
Representative Public ID T15H9.4 NCBI
Target Description T15H9.4 /REP_DB=WormBase Gene ID /WP=CE01667 /TR=SW:Q09354 /GB=CAA87417.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063668 NCBI Caenorhabditis elegans T15H9.4 (T15H9.4) mRNA, complete cds. 11/11 None
SNAP00000036797 ENSEMBL cdna:SNAP chromosome:CEL140:II:9611784:9613314:1 11/11 None
GENEFINDER00000036809 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9611784:9613314:1 11/11 None
T15H9.4 ENSEMBL cdna:known chromosome:CEL140:II:9611784:9613314:1 gene:T15H9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9611780-9613311(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15H9.4
Entrez Gene 188540 Entrez gene
SwissProt Q09354 EMBL-EBI
WormBase CE01667 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87417 Hypothetical protein T15H9.4 [Caenorhabditis elegans] ref|NP_496069.1| T15H9.4 [Caenorhabditis elegans] sp|Q09354|YRY4_CAEEL Hypothetical protein T15H9.4 in chromosome II 0.0
blast CAB02918 Hypothetical protein F10D11.5 [Caenorhabditis elegans] ref|NP_492294.1| F10D11.5 [Caenorhabditis elegans] 2.0E-85
blast CAE57954 Hypothetical protein CBG01013 [Caenorhabditis briggsae] 4.0E-85
Sequence
Target Sequence 
>C. ELEGANS:186488_AT
cattgcttgccgtcaagtcatcgctcgaagctccccagcaccaagtttggaggcggaact
gtccgagaagtttgcgaactatgcagttggagtagagaaaggaacaagaattgagaagaa
agactccagtgaaacaaacagtcttccattgcattccgatgctttggagattgcattgcg
ggagttggcatgcttgaagcaatggattgtagaaagttccactgaagttccaccgtgcga
caaggggcctactctcatgatcgatccaccaactgcgcctggctctgccgaaggatgccc
acctccattagtgaaggccaaatccacaacaaatgcaatcgagcgatcggtttacttccc
gttaagcacaactgctgctgttgcgattcttgtaagcactccaaagaagcgaagcatttt
tagacaacaggacaggaattcggctatcaattttgcggagcagcccgaccacgaaaagat
cacatcggatattcctgaagaggatgacctgaagaaatgcgagcctatgtctggaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGCTTGCCGTCAAGTCATCGCT 476 217 741 Antisense
GCTCCCCAGCACCAAGTTTGGAGGC 392 299 770 Antisense
ACAAACAGTCTTCCATTGCATTCCG 369 111 874 Antisense
AAAGTTCCACTGAAGTTCCACCGTG 294 121 953 Antisense
ATGCCCACCTCCATTAGTGAAGGCC 253 41 1035 Antisense
ATCGAGCGATCGGTTTACTTCCCGT 40 37 1078 Antisense
TTACTTCCCGTTAAGCACAACTGCT 420 679 1092 Antisense
ACTGCTGCTGTTGCGATTCTTGTAA 532 97 1111 Antisense
TCAATTTTGCGGAGCAGCCCGACCA 466 629 1187 Antisense
AGCCCGACCACGAAAAGATCACATC 120 83 1202 Antisense
GAAATGCGAGCCTATGTCTGGAATT 341 361 1254 Antisense
Sequence Source Affymetrix Proprietary Database