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[186487_at]

Description T07D4.2 /REP_DB=WormBase Gene ID /WP=CE02338 /TR=SW:Q22306 /GB=CAA90405.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 91      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 91      6grp_total > 93      4grp_total > 63      6grp_highest_sub > 04_05      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 214.8
(2.2)
P 		125
(-3)
P 		228.1
(3)
P 		124.4
(-3)
P 		104
B 175.4
(0.8)
P 		133.5
(-3)
P 		200.1
(3)
P 		158.1
(-0.8)
P 		67
C 231.6
(3)
P 		103.2
(-3)
P 		196.7
(1.4)
P 		145.5
(-1)
P 		128
avr 207.3
(2.9) 		120.6
(-3) 		208.3
(3) 		142.7
(-1.5) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 241.5
(-0.2)
P 		205.6
(-1.9)
P 		181.3
(-3)
P 		247.6
(0)
P 		312
(3)
P 		189.5
(-2.6)
P 		131
B 218.6
(-1.5)
P 		205.8
(-2.3)
P 		196.9
(-2.9)
P 		236.6
(-0.4)
P 		289.7
(3)
P 		195.1
(-3)
P 		95
C 230.3
(0.5)
P 		176
(-3)
P 		186.1
(-2.3)
P 		269.1
(3)
P 		235
(0.8)
P 		203.3
(-1.2)
P 		93
avr 230.1
(-0.2) 		195.8
(-2.5) 		188.1
(-3) 		251.1
(1.2) 		278.9
(3) 		196
(-2.5) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 78.2
(3)
P 		27.1
(-2.1)
P 		59.6
(1.1)
P 		18.2
(-3)
P 		60
B 55.9
(3)
P 		33
(-3)
P 		46.4
(0.5)
P 		33.7
(-2.8)
P 		23
C 76.7
(3)
P 		29.7
(-2.4)
P 		68.6
(2.1)
P 		24.5
(-3)
P 		52
avr 70.3
(3) 		29.9
(-2.4) 		58.2
(1.4) 		25.5
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 44.5
(-2.5)
P 		73.1
(0.7)
P 		39.5
(-3)
P 		62.8
(-0.4)
P 		94.1
(3)
P 		46.1
(-2.3)
P 		55
B 76.1
(-0.6)
P 		68.5
(-1.2)
P 		47.8
(-3)
P 		62.7
(-1.7)
P 		117.7
(3)
P 		72.7
(-0.9)
P 		70
C 85.4
(3)
P 		53.7
(-2)
P 		47.4
(-3)
P 		54.1
(-1.9)
P 		76
(1.5)
P 		68
(0.3)
P 		38
avr 68.7
(-0.2) 		65.1
(-0.6) 		44.9
(-3) 		59.9
(-1.2) 		95.9
(3) 		62.3
(-1) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2934
Sequence Type Exemplar sequence
Representative Public ID T07D4.2 NCBI
Target Description T07D4.2 /REP_DB=WormBase Gene ID /WP=CE02338 /TR=SW:Q22306 /GB=CAA90405.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027153 NCBI Caenorhabditis elegans T07D4.2b (T07D4.2) mRNA, complete cds. 11/11 None
SNAP00000030617 ENSEMBL cdna:SNAP chromosome:CEL140:II:8870012:8871859:-1 9/11 None
GENEFINDER00000030626 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8869799:8873852:-1 11/11 None
T07D4.2b ENSEMBL cdna:known chromosome:CEL140:II:8869478:8873932:-1 gene:T07D4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027152 3/11 Cross Hyb Matching Probes None
T07D4.2a 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174416 2 1 NM_001027153 186487_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8869795-8871856(-) 100.0 100.0
Public Domain and Genome References
Ensembl T07D4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04718 Hypothetical protein T07D4.2b [Caenorhabditis elegans] ref|NP_001022324.1| T07D4.2b [Caenorhabditis elegans] 1.0E-169
blast CAE59754 Hypothetical protein CBG03200 [Caenorhabditis briggsae] 1.0E-147
blast CAE59754 Hypothetical protein CBG03200 [Caenorhabditis briggsae] 1.0E-146
blast CAH04718 Hypothetical protein T07D4.2b [Caenorhabditis elegans] ref|NP_001022324.1| T07D4.2b [Caenorhabditis elegans] 1.0E-126
blast CAA90405 Hypothetical protein T07D4.2a [Caenorhabditis elegans] ref|NP_001022323.1| T07D4.2a [Caenorhabditis elegans] sp|Q22306|YW12_CAEEL Hypothetical UPF0046 protein T07D4.2 in chromosome II 1.0E-115
blast CAA90405 Hypothetical protein T07D4.2a [Caenorhabditis elegans] ref|NP_001022323.1| T07D4.2a [Caenorhabditis elegans] sp|Q22306|YW12_CAEEL Hypothetical UPF0046 protein T07D4.2 in chromosome II 1.0E-111
blast CAE59754 Hypothetical protein CBG03200 [Caenorhabditis briggsae] 5.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 5.1E-7
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.6E-15
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.6E-15
Sequence
Target Sequence 
>C. ELEGANS:186487_AT
caattgggcattcaatctctctcgtggacaacaactattggacaaatggaacctgatccc
ggcggcgttgacgtgcttttaactcatacacctccacttggacacggcgatatgatgaac
aatggacagagaatgggatgtgccgagttgttgaacacagttttcaagcgggttcgacca
aagtatcacgtttttggacacattcatgagggctacggatgcacaactgatggatataca
aagttcattaactgctgcatgtgtaatgaaaatttggatttaaagaacgagccagtaata
ttcgatatcccagtgcaccctcacaccaaacaattctacatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTGGGCATTCAATCTCTCTCGT 579 179 655 Antisense
ATCTCTCTCGTGGACAACAACTATT 30 33 669 Antisense
GGACAAATGGAACCTGATCCCGGCG 315 525 694 Antisense
GTGCTTTTAACTCATACACCTCCAC 432 467 727 Antisense
CTCCACTTGGACACGGCGATATGAT 507 235 746 Antisense
CACAGTTTTCAAGCGGGTTCGACCA 693 193 810 Antisense
GCGGGTTCGACCAAAGTATCACGTT 318 287 822 Antisense
GTATCACGTTTTTGGACACATTCAT 287 453 837 Antisense
GAGGGCTACGGATGCACAACTGATG 699 401 862 Antisense
GTAATATTCGATATCCCAGTGCACC 644 461 949 Antisense
CCCTCACACCAAACAATTCTACATT 8 261 972 Antisense
Sequence Source Affymetrix Proprietary Database