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[186485_at]

Description ZK945.8 /REP_DB=WormBase Gene ID /WP=CE01739 /TR=SW:Q09384 /GB=CAA88441.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 17.9
(-1.6)
A 		29.7
(-0.4)
A 		4.5
(-3)
A 		63.6
(3)
A 		59
B 12
(3)
A 		8.6
(-0.1)
A 		5.5
(-3)
A 		5.8
(-2.7)
A 		7
C 14.4
(0.3)
A 		23.2
(3)
A 		3.5
(-3)
A 		8.9
(-1.4)
A 		20
avr 14.8
(-0.1) 		20.5
(1.4) 		4.5
(-3) 		26.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 27.4
(0.9)
A 		11.6
(-1.6)
A 		3.8
(-2.9)
A 		3.3
(-3)
A 		30.1
(1.4)
A 		40.1
(3)
A 		37
B 29.6
(0)
A 		9
(-2.9)
A 		12
(-2.5)
A 		8.2
(-3)
A 		50.8
(3)
A 		13.2
(-2.3)
A 		43
C 3.6
(-3)
A 		30.3
(-0)
A 		16.3
(-1.6)
A 		57.5
(3)
A 		26.1
(-0.5)
A 		24.8
(-0.6)
A 		54
avr 20.2
(-0.7) 		17
(-1.5) 		10.7
(-3) 		23
(-0) 		35.7
(3) 		26
(0.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 6.5
(0.9)
A 		6.4
(0.9)
A 		1.2
(-3)
A 		9.3
(3)
A 		8
B 3.8
(3)
A 		2.1
(-0.9)
A 		1.3
(-2.8)
A 		1.2
(-3)
A 		3
C 4.8
(0.9)
A 		6.7
(3)
A 		1.2
(-3)
A 		1.5
(-2.7)
A 		6
avr 5
(2.8) 		5.1
(3) 		1.2
(-3) 		4
(1.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5
(-0.2)
A 		4.1
(-0.8)
A 		0.8
(-3)
A 		0.8
(-3)
A 		9.1
(2.5)
A 		9.8
(3)
A 		9
B 10.3
(-0.4)
A 		3
(-2.7)
A 		2.9
(-2.8)
A 		2.2
(-3)
A 		20.7
(3)
A 		4.9
(-2.1)
A 		19
C 1.3
(-3)
A 		9.2
(1.6)
A 		4.1
(-1.4)
A 		11.6
(3)
A 		8.4
(1.1)
A 		8.3
(1.1)
A 		10
avr 5.5
(-1.3) 		5.4
(-1.3) 		2.6
(-3) 		4.9
(-1.6) 		12.7
(3) 		7.7
(0) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2937
Sequence Type Exemplar sequence
Representative Public ID ZK945.8 NCBI
Target Description ZK945.8 /REP_DB=WormBase Gene ID /WP=CE01739 /TR=SW:Q09384 /GB=CAA88441.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063782 NCBI Caenorhabditis elegans ZK945.8 (ZK945.8) mRNA, complete cds. 11/11 None
SNAP00000015338 ENSEMBL cdna:SNAP chromosome:CEL140:II:10108613:10108989:1 11/11 None
GENEFINDER00000015344 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10108613:10108989:1 11/11 None
ZK945.8 ENSEMBL cdna:known chromosome:CEL140:II:10108613:10108989:1 gene:ZK945.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10108609-10108986(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK945.8
Entrez Gene 191472 Entrez gene
SwissProt Q09384 EMBL-EBI
WormBase CE01739 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88441 Hypothetical protein ZK945.8 [Caenorhabditis elegans] ref|NP_496183.1| ZK945.8 [Caenorhabditis elegans] sp|Q09384|YS88_CAEEL Hypothetical protein ZK945.8 in chromosome II 2.0E-65
blast CAE67804 Hypothetical protein CBG13382 [Caenorhabditis briggsae] 7.0E-38
blast CAB05783 Hypothetical protein K10H10.7 [Caenorhabditis elegans] ref|NP_497013.1| K10H10.7 [Caenorhabditis elegans] 1.0E-35
Sequence
Target Sequence 
>C. ELEGANS:186485_AT
gaaggagagcagcttgtgctccgcctgagagctccagttgagcgtccacgtgtcacttgg
ggagcgggagtaattgataacgaacacatgggacgtctcaaatccaattgctgttgcatc
tacactccgcctcgtgtctgggatgatccgtcaacttgggagccggaggagcatgagacg
gagcactgtcgtggacatactcttccagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGAGAGCAGCTTGTGCTCCGCC 463 333 55 Antisense
TCCGCCTGAGAGCTCCAGTTGAGCG 108 597 74 Antisense
TGAGAGCTCCAGTTGAGCGTCCACG 12 569 80 Antisense
TCCACGTGTCACTTGGGGAGCGGGA 168 589 99 Antisense
GATAACGAACACATGGGACGTCTCA 359 397 130 Antisense
GGGACGTCTCAAATCCAATTGCTGT 193 495 144 Antisense
CAATTGCTGTTGCATCTACACTCCG 390 179 159 Antisense
CCTCGTGTCTGGGATGATCCGTCAA 265 259 184 Antisense
ATCCGTCAACTTGGGAGCCGGAGGA 281 35 200 Antisense
GCATGAGACGGAGCACTGTCGTGGA 24 311 225 Antisense
CTGTCGTGGACATACTCTTCCAGAG 474 239 240 Antisense
Sequence Source Affymetrix Proprietary Database