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[186484_at]

Description F45G2.4 /REP_DB=WormBase Gene ID /WP=CE16047 /TR=SW:O62246 /GB=CAB07613.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 10      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 67      6grp_total > 50      4grp_total > 58      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1355
1 2 3 4 range
A 1540.3
(-0.2)
P 		1950
(1.9)
P 		2165.4
(3)
P 		1010
(-3)
P 		1155
B 1339.3
(-0.6)
P 		1984.5
(3)
P 		1961.6
(2.9)
P 		913.7
(-3)
P 		1071
C 1276.4
(-1.3)
P 		1869.9
(1.3)
P 		2250.3
(3)
P 		895.6
(-3)
P 		1355
avr 1385.3
(-0.7) 		1934.8
(2) 		2125.8
(3) 		939.8
(-3) 		1186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1090
1 2 3 4 5 6 range
A 1783.6
(-0.3)
P 		1659.3
(-1)
P 		1407.9
(-2.5)
P 		2358.2
(3)
P 		1312.8
(-3)
P 		1565
(-1.6)
P 		1045
B 1743.3
(3)
P 		1329.5
(-2.2)
P 		1698.9
(2.4)
P 		1688.4
(2.3)
P 		1302.9
(-2.6)
P 		1268.2
(-3)
P 		475
C 1984.1
(0.8)
P 		1360.1
(-3)
P 		2335.4
(3)
P 		1793.4
(-0.3)
P 		1703.7
(-0.9)
P 		1565.6
(-1.7)
P 		975
avr 1837
(1.7) 		1449.6
(-2.9) 		1814.1
(1.4) 		1946.7
(3) 		1439.8
(-3) 		1466.3
(-2.7) 		507
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 637
1 2 3 4 range
A 560.8
(2.9)
P 		423.3
(1)
P 		566.1
(3)
P 		147.8
(-3)
P 		418
B 427.1
(1.7)
P 		490.1
(3)
P 		454.5
(2.3)
P 		194.7
(-3)
P 		295
C 422.5
(-0.4)
P 		537.6
(0.7)
P 		784.3
(3)
P 		151
(-3)
P 		633
avr 470.1
(1.2) 		483.7
(1.4) 		601.6
(3) 		164.5
(-3) 		437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 328.8
(-2.5)
P 		590.1
(2.8)
P 		306.6
(-3)
P 		598.1
(3)
P 		396.1
(-1.2)
P 		381
(-1.5)
P 		292
B 606.6
(3)
P 		442.5
(-2.1)
P 		412.5
(-3)
P 		447.2
(-1.9)
P 		529.3
(0.6)
P 		472.9
(-1.1)
P 		194
C 735.4
(3)
P 		415
(-2.1)
P 		594.4
(0.7)
P 		360.7
(-3)
P 		551.3
(0.1)
P 		524.1
(-0.4)
P 		375
avr 556.9
(3) 		482.5
(-0.7) 		437.8
(-3) 		468.7
(-1.4) 		492.2
(-0.3) 		459.3
(-1.9) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7336
Sequence Type Exemplar sequence
Representative Public ID F45G2.4 NCBI
Target Description F45G2.4 /REP_DB=WormBase Gene ID /WP=CE16047 /TR=SW:O62246 /GB=CAB07613.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067370 NCBI Caenorhabditis elegans F45G2.4 (F45G2.4) mRNA, complete cds. 11/11 None
SNAP00000011669 ENSEMBL cdna:SNAP chromosome:CEL140:III:13425870:13427096:1 11/11 None
GENEFINDER00000011683 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13425870:13427096:1 11/11 None
F45G2.4 ENSEMBL cdna:known chromosome:CEL140:III:13425616:13427220:1 gene:F45G2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13425865-13427092(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45G2.4
Entrez Gene 176766 Entrez gene
SwissProt O62246 EMBL-EBI
WormBase CE16047 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17883_S_AT coatomer protein epsilon subunit family protein / COPE family protein at
ATH1-121501:267428_AT coatomer protein epsilon subunit family protein / COPE family protein at
CANINE:1603557_S_AT similar to epsilon subunit of coatomer protein complex isoform c cfa
CANINE:1584860_AT similar to epsilon subunit of coatomer protein complex isoform c cfa
CANINE_2:CFA.11851.1.S1_AT similar to epsilon subunit of coatomer protein complex isoform c cfa
CANINE_2:CFAAFFX.22407.1.S1_S_AT similar to epsilon subunit of coatomer protein complex isoform c cfa
DROSOPHILA_2:1633785_AT dm
DROSGENOME1:154510_AT dm
CHICKEN:GGAAFFX.12878.1.S1_S_AT coatomer protein complex, subunit epsilon gga
HG-U133_PLUS_2:201264_AT coatomer protein complex, subunit epsilon hs
HG-U133A:201264_AT coatomer protein complex, subunit epsilon hs
HG-FOCUS:201264_AT coatomer protein complex, subunit epsilon hs
HG-U133A_2:201264_AT coatomer protein complex, subunit epsilon hs
HG-U133_PLUS_2:220469_AT coatomer protein complex, subunit epsilon hs
HG-U133A:220469_AT coatomer protein complex, subunit epsilon hs
HG-U133A_2:220469_AT coatomer protein complex, subunit epsilon hs
HU35KSUBA:RC_AA497015_AT coatomer protein complex, subunit epsilon hs
HU35KSUBA:AA458542_AT coatomer protein complex, subunit epsilon hs
HU35KSUBD:RC_R49138_S_AT coatomer protein complex, subunit epsilon hs
U133_X3P:G6005734_3P_X_AT coatomer protein complex, subunit epsilon hs
U133_X3P:G6005734_3P_AT coatomer protein complex, subunit epsilon hs
U133_X3P:G13376645_3P_AT coatomer protein complex, subunit epsilon hs
HG-U95AV2:38647_AT coatomer protein complex, subunit epsilon hs
HG-U95D:72597_AT coatomer protein complex, subunit epsilon hs
MU11KSUBA:AA028362_S_AT coatomer protein complex, subunit epsilon mm
MG-U74AV2:98930_AT coatomer protein complex, subunit epsilon mm
MOE430A:1416384_A_AT coatomer protein complex, subunit epsilon mm
MOUSE430A_2:1416384_A_AT coatomer protein complex, subunit epsilon mm
MOUSE430_2:1416384_A_AT coatomer protein complex, subunit epsilon mm
MU19KSUBA:TC23588_AT Coatomer protein complex, subunit epsilon, mRNA (cDNA clone MGC:6951 IMAGE:2812643) mm
RG-U34B:RC_AA963071_AT coatomer protein complex, subunit epsilon (predicted) rn
RAE230A:1371802_AT coatomer protein complex, subunit epsilon (predicted) rn
RAT230_2:1371802_AT coatomer protein complex, subunit epsilon (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07613 Hypothetical protein F45G2.4 [Caenorhabditis elegans] ref|NP_499771.1| F45G2.4 [Caenorhabditis elegans] sp|O62246|COPE_CAEEL Probable coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) 1.0E-151
blast CAE73699 Hypothetical protein CBG21210 [Caenorhabditis briggsae] 1.0E-132
blast AAI06261 MGC80063 protein [Xenopus laevis] gb|AAH71087.1| MGC80063 protein [Xenopus laevis] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR006822 EMBL-EBI Coatomer epsilon subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186484_AT
tcagaaatcgcagctgttcttgccgctactattctcaatgaagctgatctctcccaagac
gcattccgtgcagtttcccgtttcgaaggtctcgaggctcgtgcctccaaggtgtttatt
ctcattaaaatgaacaagcggaagcttgcaattggtgaagtgaagaaaatgaatcaaatc
gacgaggacgctactctttctcaactcgcaaatgctctcgtcacctcgttcggtgcatct
ggaaaagtaaaagatgctctttacatttacagcgaaatgtctgataaatacggaagaact
actgatttggagatgcatcaagctgttgttagtattttgactcaagactatgctgctgca
gaggagcttttggagagtgctctggaaagagataacaaagatgctgatgtgctcatcaac
tcaatcgtttccgcccagctcaacgaaaaagatgacgatgtcgtcgaacgtttcatctct
cagctgaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGAAATCGCAGCTGTTCTTGCCG 676 623 316 Antisense
TTCTTGCCGCTACTATTCTCAATGA 78 691 332 Antisense
CTCAATGAAGCTGATCTCTCCCAAG 27 229 349 Antisense
CCAAGACGCATTCCGTGCAGTTTCC 369 277 369 Antisense
TTCGAAGGTCTCGAGGCTCGTGCCT 158 691 397 Antisense
GCCTCCAAGGTGTTTATTCTCATTA 708 281 418 Antisense
AATCGACGAGGACGCTACTCTTTCT 281 169 492 Antisense
ACCTCGTTCGGTGCATCTGGAAAAG 686 87 538 Antisense
TTGACTCAAGACTATGCTGCTGCAG 450 703 652 Antisense
TTTCCGCCCAGCTCAACGAAAAAGA 437 665 743 Antisense
GAACGTTTCATCTCTCAGCTGAAGC 647 347 781 Antisense
Sequence Source Affymetrix Proprietary Database