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[186482_s_at]

Description C10H11.10 /REP_DB=WormBase Gene ID /WP=CE08099 /TR=P91042 /GB=AAB42349.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 16      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 15.3
(-2.7)
A 		12.6
(-3)
A 		12.4
(-3)
A 		70.7
(3)
A 		58
B 7.9
(-3)
A 		33.7
(3)
A 		8.1
(-3)
A 		13.6
(-1.7)
A 		26
C 10.5
(-1.5)
A 		3.6
(-3)
A 		31.7
(3)
A 		17.8
(0)
A 		28
avr 11.2
(-3) 		16.6
(-1.6) 		17.4
(-1.4) 		34
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 662
1 2 3 4 5 6 range
A 5.5
(-3)
A 		10.6
(-3)
A 		8.2
(-3)
A 		128.4
(-1.9)
A 		405.1
(0.6)
M 		667.8
(3)
P 		662
B 11.6
(-3)
A 		8.3
(-3)
A 		9.8
(-3)
A 		101.8
(-2)
A 		416
(1.3)
P 		579.3
(3)
P 		571
C 12.2
(-3)
A 		11.5
(-3)
A 		37.8
(-2.7)
A 		109.9
(-2)
A 		363.2
(0.5)
P 		613.9
(3)
P 		602
avr 9.8
(-3) 		10.1
(-3) 		18.6
(-2.9) 		113.4
(-2) 		394.8
(0.8) 		620.3
(3) 		611
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.6
(-0.7)
A 		2.7
(-3)
A 		3.2
(-2.6)
A 		10.3
(3)
A 		8
B 2.5
(-2.4)
A 		8.3
(3)
A 		1.9
(-3)
A 		2.9
(-2.1)
A 		6
C 3.5
(-1.5)
A 		1
(-3)
A 		11.1
(3)
A 		3
(-1.8)
A 		10
avr 3.9
(-3) 		4
(-2.6) 		5.4
(3) 		5.4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 1
(-3)
A 		3.8
(-2.9)
A 		1.8
(-3)
A 		32.6
(-1.8)
A 		122.2
(1.5)
M 		162.6
(3)
P 		162
B 4
(-3)
A 		2.8
(-3)
A 		2.4
(-3)
A 		27
(-2.3)
A 		169
(1.7)
P 		216
(3)
P 		214
C 4.5
(-3)
A 		3.5
(-3)
A 		9.6
(-2.8)
A 		22.1
(-2.4)
A 		117.5
(0.4)
P 		205.5
(3)
P 		202
avr 3.2
(-3) 		3.4
(-3) 		4.6
(-3) 		27.2
(-2.2) 		136.2
(1.2) 		194.7
(3) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186482_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1316
Sequence Type Exemplar sequence
Representative Public ID C10H11.10 NCBI
Target Description C10H11.10 /REP_DB=WormBase Gene ID /WP=CE08099 /TR=P91042 /GB=AAB42349.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059042 NCBI Caenorhabditis elegans Kinesin Cargo Adaptor family member (kca-1) (kca-1) mRNA, complete cds. 11/11 A 
C10H11.10 ENSEMBL cdna:known chromosome:CEL140:I:4759881:4761505:-1 gene:C10H11.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4759984-4761505(-) 99.78 100.0
Public Domain and Genome References
Gene Title
Gene Symbol kca-1
Ensembl C10H11.10
Entrez Gene 172090 Entrez gene
SwissProt P91042 EMBL-EBI
WormBase CE39088 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491443 Kinesin Cargo Adaptor family member (kca-1) [Caenorhabditis elegans] 0.0
blast AAB42349 Kinesin cargo adaptor protein 1 [Caenorhabditis elegans] 0.0
blast ABA18182 kinesin 1 cargo adaptor alternative variant a [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491443.1 1 17-39
C10H11.10 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:186482_S_AT
gtgactccaacacagtcgctgtgccagctgcagtcttcaacaacacttcatcgattctac
ttgataatgctgtaattatgacaacgttgaacaagagtcgagaggaaactaatgaaattc
tgtgcaaatcattgaacagagatttctaccagctggcctatgtcgactcggaagacgctg
agcaagaccacggaaagcccgaacaatcaactcagaatcccctttgcaacacatatgtcg
ttcattcgtcagaggaaatgtcatctgaaccaagcagttcgaccatcaacctagatcaag
ccaatgtttctgatgatgcgaggagcgccattctgggattggatcgtgtggaaaatgcca
ttcagcgtgcacttgccaaccagaatgggccagaacaaggactcgctaggcaacttcgag
agcgcatccagagcatcaaaaagagcatcgacgagatctgcagcgaatgtccgaatggcc
cggaaatcgacactgatcgtgtgagccgggaaagtgaccacgacgtatccgccgacttcg
aggattcggattggcagccgcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACTCCAACACAGTCGCTGTGCC 599 481 761 Antisense
GTCTTCAACAACACTTCATCGATTC 404 469 793 Antisense
AGATTTCTACCAGCTGGCCTATGTC 517 65 900 Antisense
GGCCTATGTCGACTCGGAAGACGCT 491 543 915 Antisense
AGAATCCCCTTTGCAACACATATGT 518 75 974 Antisense
GCAGTTCGACCATCAACCTAGATCA 465 309 1034 Antisense
GATGCGAGGAGCGCCATTCTGGGAT 31 415 1075 Antisense
AAAATGCCATTCAGCGTGCACTTGC 199 133 1112 Antisense
GCAACTTCGAGAGCGCATCCAGAGC 247 319 1170 Antisense
CTGCAGCGAATGTCCGAATGGCCCG 77 239 1218 Antisense
GAGGATTCGGATTGGCAGCCGCATT 127 403 1300 Antisense
Sequence Source Affymetrix Proprietary Database