[Home] | [Total List]

[186481_at] G-protein coupled receptor, srh family

Description Y102A5C.21 /REP_DB=WormBase Gene ID /WP=CE20393 /TR=Q9XX73 /GB=CAA20962.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 04      6grp_cgc > 32      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 39.8
(-1.5)
A 		13.4
(-2.7)
A 		5.4
(-3)
A 		142.8
(3)
M 		137
B 44.4
(2.9)
A 		10.6
(-2.5)
A 		7.8
(-3)
A 		45.1
(3)
A 		37
C 49.8
(-1.5)
A 		7.4
(-2.9)
A 		5.3
(-3)
A 		179
(3)
P 		174
avr 44.7
(-1) 		10.5
(-2.8) 		6.2
(-3) 		122.3
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 26.8
(-0.1)
A 		11.1
(-2.2)
A 		50.5
(3)
A 		10.8
(-2.2)
A 		4.7
(-3)
A 		18
(-1.3)
A 		46
B 55.8
(3)
A 		35.9
(-0.2)
A 		23.8
(-2.1)
A 		21.2
(-2.5)
A 		22.9
(-2.2)
A 		18.1
(-3)
A 		38
C 26.3
(-1)
A 		66.9
(3)
A 		8.2
(-2.7)
A 		19.7
(-1.6)
A 		38.7
(0.3)
A 		5.3
(-3)
A 		62
avr 36.3
(2.6) 		38
(3) 		27.5
(0.4) 		17.2
(-2.2) 		22.1
(-0.9) 		13.8
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 14.5
(1)
A 		2.9
(-2.5)
A 		1.4
(-3)
A 		20.9
(3)
M 		20
B 14.2
(3)
A 		2.6
(-2.6)
A 		1.8
(-3)
A 		9.6
(0.8)
A 		12
C 16.5
(0.1)
A 		2.1
(-2.9)
A 		1.8
(-3)
A 		30.2
(3)
P 		28
avr 15.1
(1.3) 		2.5
(-2.7) 		1.7
(-3) 		20.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.9
(-0.8)
A 		3.9
(-1.4)
A 		11
(3)
A 		2.7
(-2.2)
A 		1.4
(-3)
A 		4.4
(-1.1)
A 		10
B 19.4
(3)
A 		11.9
(-0.3)
A 		5.8
(-2.9)
A 		5.6
(-3)
A 		9.3
(-1.4)
A 		6.7
(-2.5)
A 		14
C 9.7
(-0.5)
A 		20.4
(3)
A 		2.1
(-2.9)
A 		4
(-2.3)
A 		12.5
(0.5)
A 		1.8
(-3)
A 		19
avr 11.3
(2.4) 		12.1
(3) 		6.3
(-1.4) 		4.1
(-3) 		7.7
(-0.3) 		4.3
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12856
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.21 NCBI
Target Description Y102A5C.21 /REP_DB=WormBase Gene ID /WP=CE20393 /TR=Q9XX73 /GB=CAA20962.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074891(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074891 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-119) (srh-119) mRNA, complete cds. 11/11 None
GENEFINDER00000003173 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16975012:16976666:1 11/11 None
Y102A5C.21 ENSEMBL cdna:known chromosome:CEL140:V:16975012:16976666:1 gene:Y102A5C.21 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003160 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16974912-16976666(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-119
Ensembl Y102A5C.21
Entrez Gene 190844 Entrez gene
SwissProt Q9XX73 EMBL-EBI
WormBase CE33200 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20962 Hypothetical protein Y102A5C.21 [Caenorhabditis elegans] ref|NP_507292.2| Serpentine Receptor, class H family member (srh-119) [Caenorhabditis elegans] 0.0
blast CAB04862 Hypothetical protein T27C5.1 [Caenorhabditis elegans] ref|NP_507400.2| Serpentine Receptor, class H family member (srh-120) [Caenorhabditis elegans] 1.0E-158
blast CAB04631 Hypothetical protein R08H2.5 [Caenorhabditis elegans] ref|NP_506818.2| Serpentine Receptor, class H family member (srh-122) [Caenorhabditis elegans] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507292.2 7 31-53,66-88,108-130,151-170,215-237,258-280,290-312
Y102A5C.21 7 31-53,66-88,108-130,151-170,215-237,258-280,290-312
GENEFINDER00000003173 7 31-53,66-88,108-130,151-170,215-237,258-280,290-312
Sequence
Target Sequence 
>C. ELEGANS:186481_AT
attgattcccgtgttattcgcacttccatttctcttcttttttcgtcgggaccaagacgc
cgcaaagctcgatgccctgaagaattatccatgcccaactcgcgagtttttcaccacttc
ggtgttcatcgctcttactgataagactctgatgagttatgttttagttccatttttaat
gggtgtgtcaagcgttgtcggtcatttcctattccagatgggttgtcttgtgtactatat
atatattgttccatcgagaagcgtctcaagagaaacacgagaaaagcagaaaacattttt
gatcagcattctgtttcaaacgtcagtgcccttttttgttgcaattccagcagcgacagt
gttgtttttgtatttatatggctattattcccaaaaagtcatgaactcggtcatttgctt
cattcaaaatcatggtattgttgaaagtatttgtctcatatgtgttcataagccttatcg
aaacgctatcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGATTCCCGTGTTATTCGCACTT 283 3 582 Antisense
TTTCGTCGGGACCAAGACGCCGCAA 622 653 622 Antisense
TGCCCTGAAGAATTATCCATGCCCA 192 585 654 Antisense
GGTGTTCATCGCTCTTACTGATAAG 648 499 702 Antisense
TGTCAAGCGTTGTCGGTCATTTCCT 284 559 767 Antisense
CGGTCATTTCCTATTCCAGATGGGT 403 243 780 Antisense
GCATTCTGTTTCAAACGTCAGTGCC 56 309 887 Antisense
GTCAGTGCCCTTTTTTGTTGCAATT 201 467 903 Antisense
GCAATTCCAGCAGCGACAGTGTTGT 191 323 922 Antisense
GAACTCGGTCATTTGCTTCATTCAA 476 349 984 Antisense
TAAGCCTTATCGAAACGCTATCGCA 93 639 1050 Antisense
Sequence Source Affymetrix Proprietary Database