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[186480_s_at]

Description M01A10.2A /REP_DB=WormBase Gene ID /WP=CE12228 /TR=P91389 /GB=AAB42273.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 50      6grp_total > 37      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 528
1 2 3 4 range
A 698.8
(3)
P 		247.8
(-3)
P 		249.3
(-3)
P 		576.5
(1.4)
P 		451
B 655
(3)
P 		309
(-1.5)
P 		194.7
(-3)
P 		604.5
(2.3)
P 		460
C 722.5
(3)
P 		269.4
(-3)
P 		307.6
(-2.5)
P 		504.9
(0.1)
P 		453
avr 692.1
(3) 		275.4
(-2.7) 		250.5
(-3) 		562
(1.2) 		442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 573.7
(1.4)
P 		644.6
(3)
P 		384.2
(-3)
P 		511.7
(-0.1)
P 		384.9
(-3)
P 		481.7
(-0.8)
P 		260
B 588.5
(3)
P 		567.6
(2.2)
P 		472.2
(-1.2)
P 		483.9
(-0.8)
P 		424
(-3)
P 		557.7
(1.9)
P 		165
C 691.6
(3)
P 		525.8
(-0.7)
P 		421.5
(-3)
P 		500.5
(-1.2)
P 		462.8
(-2.1)
P 		550.1
(-0.1)
P 		270
avr 617.9
(3) 		579.3
(1.8) 		426
(-2.9) 		498.7
(-0.7) 		423.9
(-3) 		529.8
(0.3) 		194
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 254.4
(3)
P 		53.8
(-3)
P 		65.2
(-2.7)
P 		84.4
(-2.1)
P 		201
B 208.9
(3)
P 		76.3
(-1.9)
P 		45.1
(-3)
P 		128.8
(0.1)
P 		164
C 239.2
(3)
P 		77.5
(-3)
P 		107.2
(-1.9)
P 		85.1
(-2.7)
P 		162
avr 234.2
(3) 		69.2
(-3) 		72.5
(-2.9) 		99.4
(-1.9) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 105.8
(-2.1)
P 		229.3
(3)
P 		83.7
(-3)
P 		129.8
(-1.1)
P 		116.2
(-1.7)
P 		117.3
(-1.6)
P 		146
B 204.8
(2.8)
P 		188.9
(1.8)
P 		114.7
(-3)
P 		128.2
(-2.1)
P 		172.3
(0.7)
P 		207.9
(3)
P 		93
C 256.4
(3)
P 		160.4
(-0.7)
P 		107.3
(-2.7)
P 		100.7
(-3)
P 		149.8
(-1.1)
P 		184.1
(0.2)
P 		156
avr 189
(2.7) 		192.9
(3) 		101.9
(-3) 		119.6
(-1.8) 		146.1
(-0.1) 		169.8
(1.5) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186480_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.633
Sequence Type Exemplar sequence
Representative Public ID M01A10.2A NCBI
Target Description M01A10.2A /REP_DB=WormBase Gene ID /WP=CE12228 /TR=P91389 /GB=AAB42273.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059222(11), NM_170866(11), NM_059225(11), AY912102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059222 NCBI Caenorhabditis elegans TOMOsyn synaptic protein family member (tomo-1) (tomo-1) mRNA, complete cds. 11/11 None
NM_170866 NCBI Caenorhabditis elegans TOMOsyn synaptic protein family member (tomo-1) (tomo-1) mRNA, complete cds. 11/11 None
NM_059225 NCBI Caenorhabditis elegans TOMOsyn synaptic protein family member (tomo-1) (tomo-1) mRNA, complete cds. 11/11 None
AY912102 NCBI Caenorhabditis elegans tomosyn isoform A (tom-1) mRNA, complete cds. 11/11 None
SNAP00000009744 ENSEMBL cdna:SNAP chromosome:CEL140:I:5557680:5561305:1 11/11 None
GENEFINDER00000009749 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5557680:5566202:1 11/11 None
M01A10.2a ENSEMBL cdna:known chromosome:CEL140:I:5546426:5561635:1 gene:M01A10.2 11/11 None
M01A10.2c ENSEMBL cdna:known chromosome:CEL140:I:5546426:5561305:1 gene:M01A10.2 11/11 None
M01A10.2b ENSEMBL cdna:known chromosome:CEL140:I:5558876:5561305:1 gene:M01A10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5546425-5561305(+) 100.0 100.0
Public Domain and Genome References
Ensembl M01A10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68902 Tomosyn (vertebrate synaptic protein) homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_491623.2| TOMOsyn synaptic protein family member (tomo-1) [Caenorhabditis elegans] 0.0
blast AAX89145 tomosyn isoform A [Caenorhabditis elegans] 0.0
blast CAE68910 Hypothetical protein CBG14886 [Caenorhabditis briggsae] 0.0
blast AAP68903 Tomosyn (vertebrate synaptic protein) homolog protein 1, isoform c [Caenorhabditis elegans] ref|NP_740853.2| TOMOsyn synaptic protein family member (tomo-1) [Caenorhabditis elegans] 0.0
blast T25828 hypothetical protein M01A10.2a - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 1.5E-11
Pfam IPR004087 EMBL-EBI KH 6.0E-10
Pfam IPR004087 EMBL-EBI KH 2.4E-11
Pfam IPR004087 EMBL-EBI KH 2.4E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0023
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.6E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0023
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.6E-4
Sequence
Target Sequence 
>C. ELEGANS:186480_S_AT
tgatgtgtctatcagcagctggtcagattatcatgttatcactaccatcattgagaattc
ttcaaacttctacgattttcccacattctgtggaaattgatgaccctctatgtcaaaaaa
cagcattttccgatcacggattgggtgtttacatggcaagtcaaacagagatggaaaagt
acacaatgtgctccgaaattgccgagcaaacaggcgagtcacttggagaactatttgtac
catgtgaaatgccagaacagccaaaaaataattcattcttgaagggagtgtcatcgatct
ttggaggaactccaagaaatgatcctaatgatattgatgccatcttgtctgagaacatgg
gagtcaagaatagttctggagtgaatccgatgcgtagcgttgcccgaacaattcctggac
catcagttcaaatggatagagcacaagctggtggagtgtctgctggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGTGTCTATCAGCAGCTGGTCA 236 565 3542 Antisense
ATCATGTTATCACTACCATCATTGA 503 27 3571 Antisense
TTCAAACTTCTACGATTTTCCCACA 522 685 3602 Antisense
AAAACAGCATTTTCCGATCACGGAT 54 131 3658 Antisense
GGATTGGGTGTTTACATGGCAAGTC 655 507 3679 Antisense
CACAATGTGCTCCGAAATTGCCGAG 640 193 3723 Antisense
CCGAGCAAACAGGCGAGTCACTTGG 464 263 3743 Antisense
GGGAGTGTCATCGATCTTTGGAGGA 464 495 3825 Antisense
AGTGAATCCGATGCGTAGCGTTGCC 439 59 3921 Antisense
AACAATTCCTGGACCATCAGTTCAA 693 133 3948 Antisense
AAGCTGGTGGAGTGTCTGCTGGACA 156 151 3986 Antisense
Sequence Source Affymetrix Proprietary Database