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[186479_s_at]

Description Y102A5C.18 /REP_DB=WormBase Gene ID /WP=CE20390 /TR=Q9XX87 /GB=CAA20948.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 62      6grp_cgc > 39      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 168.5
(3)
A 		138.2
(1.2)
A 		158.8
(2.4)
A 		66.5
(-3)
A 		102
B 174.8
(3)
A 		124.9
(-3)
A 		141.8
(-1)
A 		137.5
(-1.5)
A 		50
C 154.1
(3)
A 		135.9
(0.8)
A 		119.7
(-1.2)
A 		104.7
(-3)
A 		49
avr 165.8
(3) 		133
(-0.1) 		140.1
(0.5) 		102.9
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 142.1
(-1.6)
A 		117.9
(-3)
A 		128.8
(-2.4)
A 		140.3
(-1.7)
A 		224.1
(3)
P 		212
(2.3)
P 		106
B 174.5
(0.6)
M 		155.8
(-1)
A 		131.6
(-3)
A 		163.9
(-0.3)
A 		203.7
(3)
P 		199.3
(2.6)
P 		72
C 184.4
(1.8)
A 		141.6
(-1.4)
A 		119.9
(-3)
A 		159.4
(-0.1)
P 		128.7
(-2.3)
P 		200.3
(3)
P 		80
avr 167
(0.1) 		138.4
(-2.1) 		126.8
(-3) 		154.5
(-0.8) 		185.5
(1.6) 		203.9
(3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 61.4
(3)
A 		30
(-0.6)
A 		41.5
(0.7)
A 		9.7
(-3)
A 		52
B 55.8
(3)
A 		30.9
(-2.6)
A 		32.9
(-2.2)
A 		29.3
(-3)
A 		27
C 51
(3)
A 		39.1
(0.9)
A 		41.7
(1.3)
A 		17.6
(-3)
A 		33
avr 56.1
(3) 		33.3
(-0.7) 		38.7
(0.2) 		18.9
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 26.2
(-3)
A 		41.9
(-0.7)
A 		28
(-2.7)
A 		35.6
(-1.6)
A 		67.6
(3)
P 		51.6
(0.7)
P 		41
B 60.7
(0.4)
M 		51.8
(-0.6)
A 		31.9
(-3)
A 		43.4
(-1.6)
A 		82.7
(3)
P 		74.3
(2)
P 		51
C 68.3
(3)
A 		43.2
(-1)
A 		30.5
(-3)
A 		32.1
(-2.7)
P 		41.6
(-1.2)
P 		67.1
(2.8)
P 		38
avr 51.7
(0.8) 		45.6
(-0.3) 		30.1
(-3) 		37
(-1.8) 		64
(2.9) 		64.3
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186479_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12533
Sequence Type Exemplar sequence
Representative Public ID Y102A5C.18 NCBI
Target Description Y102A5C.18 /REP_DB=WormBase Gene ID /WP=CE20390 /TR=Q9XX87 /GB=CAA20948.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074888 NCBI Caenorhabditis elegans E2F-like (mammalian transcription factor) family member (efl-1) (efl-1) mRNA, complete cds. 11/11 A 
SNAP00000003159 ENSEMBL cdna:SNAP chromosome:CEL140:V:16959920:16968251:-1 11/11 None
GENEFINDER00000003193 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16961347:16968251:-1 11/11 None
Y102A5C.18.2 ENSEMBL cdna:known chromosome:CEL140:V:16961157:16968253:-1 gene:Y102A5C.18 11/11 None
Y102A5C.18.1 ENSEMBL cdna:known chromosome:CEL140:V:16961231:16968259:-1 gene:Y102A5C.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16961529-16968251(-) 99.51 100.0
Public Domain and Genome References
Gene Title
Gene Symbol efl-1
Ensembl Y102A5C.18
Entrez Gene 180133 Entrez gene
SwissProt Q9XX87 EMBL-EBI
WormBase CE20390 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5667 transcription factor complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20948 Hypothetical protein Y102A5C.18 [Caenorhabditis elegans] ref|NP_507289.1| E2F-like (mammalian transcription factor) family member (efl-1) [Caenorhabditis elegans] gb|AAK19022.1| EFL-1 [Caenorhabditis elegans] 0.0
blast CAE71632 Hypothetical protein CBG18599 [Caenorhabditis briggsae] 1.0E-117
blast CAE71632 Hypothetical protein CBG18599 [Caenorhabditis briggsae] 1.0E-116
blast CAE71632 Hypothetical protein CBG18599 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR003316 EMBL-EBI Transcription factor E2F/dimerisation partner (TDP) 2.2E-29
Sequence
Target Sequence 
>C. ELEGANS:186479_S_AT
aagatggcttcagcagagcctccgaaacatgacagaatccgtggagaacaacaagctcag
ctatgtgctccgttcacagctcgccgagattcaaggctcagatcttacgattggaattca
aacgagagtcggcacacaagttcggctcagtgatccggagcaagtcgagatacacggtgg
accatcttggtgttacctgaaagatccctctggacccctccgagccgccatcgtttccaa
ccatgagctacatgattttgtacagagagaacgagcaaaacggcctggtgaagagcacgt
tgacgctgatgctccagatgaaatgatggatgattcaagatatcggaatcggcggacgat
caatgatgatgaaatgtttggttttgagcagaaagtcccagcgatgaagcatctggagcc
accaccggccagcgatgactacgtttattcgagcaccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGATGGCTTCAGCAGAGCCTCCGA 139 155 537 Antisense
GAGCCTCCGAAACATGACAGAATCC 514 385 552 Antisense
ACAGCTCGCCGAGATTCAAGGCTCA 515 107 612 Antisense
GAGAGTCGGCACACAAGTTCGGCTC 489 393 660 Antisense
AGTTCGGCTCAGTGATCCGGAGCAA 433 63 675 Antisense
GGTGGACCATCTTGGTGTTACCTGA 479 497 712 Antisense
TTACCTGAAAGATCCCTCTGGACCC 40 669 729 Antisense
CATCGTTTCCAACCATGAGCTACAT 247 211 765 Antisense
CACGTTGACGCTGATGCTCCAGATG 445 199 832 Antisense
GAGCAGAAAGTCCCAGCGATGAAGC 682 389 922 Antisense
TGACTACGTTTATTCGAGCACCGGA 505 571 972 Antisense
Sequence Source Affymetrix Proprietary Database