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[186478_at]

Description Y55F3AM.8 /REP_DB=WormBase Gene ID /WP=CE25490 /TR=Q9N371 /GB=AAF60800.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 83      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 74      6grp_total > 09      4grp_total > 42      6grp_highest_sub > 04      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 492.4
(-3)
P 		614.8
(-0)
P 		540.8
(-1.8)
P 		738.6
(3)
P 		246
B 541.5
(-2.6)
P 		642.1
(0.9)
P 		704.6
(3)
P 		529.4
(-3)
P 		175
C 568.1
(-1.4)
P 		890.4
(3)
P 		746
(1)
P 		453.3
(-3)
P 		437
avr 534
(-3) 		715.8
(3) 		663.8
(1.3) 		573.8
(-1.7) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 776.7
(2.3)
P 		565.3
(-3)
P 		760.7
(1.9)
P 		803.7
(3)
P 		713.3
(0.7)
P 		746.6
(1.6)
P 		238
B 776
(2.9)
P 		541.4
(-3)
P 		722.3
(1.5)
P 		781
(3)
P 		583.8
(-1.9)
P 		716.2
(1.4)
P 		240
C 754.2
(1.1)
P 		526.4
(-3)
P 		678.8
(-0.2)
P 		658.3
(-0.6)
P 		856.9
(3)
P 		721.5
(0.5)
P 		331
avr 769
(3) 		544.4
(-3) 		720.6
(1.7) 		747.7
(2.4) 		718
(1.6) 		728.1
(1.9) 		225
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 179.3
(3)
P 		133.5
(-0.9)
P 		141.4
(-0.2)
P 		108.1
(-3)
P 		71
B 172.7
(3)
P 		158.6
(1.6)
P 		163.3
(2.1)
P 		112.8
(-3)
P 		60
C 188
(0.6)
P 		256
(2.9)
P 		260
(3)
P 		76.4
(-3)
P 		184
avr 180
(2.4) 		182.7
(2.6) 		188.2
(3) 		99.1
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 143.2
(-3)
P 		201
(1.8)
P 		165.7
(-1.1)
P 		203.8
(2.1)
P 		215.2
(3)
P 		181.8
(0.2)
P 		72
B 270
(3)
P 		180.2
(-2.7)
P 		175.4
(-3)
P 		206.9
(-1)
P 		237.2
(0.9)
P 		267.1
(2.8)
P 		95
C 279.6
(3)
P 		160.6
(-1.9)
P 		172.8
(-1.4)
P 		132.4
(-3)
P 		277.3
(2.9)
P 		241.5
(1.4)
P 		147
avr 230.9
(2) 		180.6
(-2.2) 		171.3
(-3) 		181
(-2.2) 		243.2
(3) 		230.1
(1.9) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10462
Sequence Type Exemplar sequence
Representative Public ID Y55F3AM.8 NCBI
Target Description Y55F3AM.8 /REP_DB=WormBase Gene ID /WP=CE25490 /TR=Q9N371 /GB=AAF60800.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067621 NCBI Caenorhabditis elegans Y55F3AM.8 (Y55F3AM.8) mRNA, complete cds. 11/11 None
GENEFINDER00000030065 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1003647:1005856:-1 11/11 None
Y55F3AM.8 ENSEMBL cdna:known chromosome:CEL140:IV:1003652:1005856:-1 gene:Y55F3AM.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030048 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1003657-1005862(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55F3AM.8
Entrez Gene 176919 Entrez gene
SwissProt Q9N371 EMBL-EBI
WormBase CE25490 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:259199_AT signal peptidase I family protein at
DROSOPHILA_2:1627020_AT dm
DROSGENOME1:147562_AT dm
CHICKEN:GGA.10961.1.S1_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) gga
HU35KSUBB:RC_T67153_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
U133_X3P:HS2.89576.2.S1_3P_X_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
U133_X3P:HS2.89576.2.S1_3P_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
U133_X3P:HS.89576.1.S1_3P_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
HG-U133_PLUS_2:1555571_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
HG-U133_PLUS_2:227153_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
HG-U133B:227153_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
HG-U95C:59954_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
HG-U133_PLUS_2:244290_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
HG-U133B:244290_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) hs
MG-U74BV2:117134_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) mm
MOE430A:1419495_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) mm
MOUSE430A_2:1419495_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) mm
MOUSE430_2:1419495_AT IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) mm
MG-U74CV2:168766_I_AT Inner mitochondrial membrane peptidase 2-like (S. cerevisiae) (Immp2l), mRNA mm
YEAST_2:1775280_AT Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of mitochondrial proteins of the intermembrane space; complex contains Imp1p and Imp2p (both catalytic subunits), and Som1p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60800 Hypothetical protein Y55F3AM.8 [Caenorhabditis elegans] ref|NP_500022.1| Y55F3AM.8 [Caenorhabditis elegans] 7.0E-89
blast AAF60800 Hypothetical protein Y55F3AM.8 [Caenorhabditis elegans] ref|NP_500022.1| Y55F3AM.8 [Caenorhabditis elegans] 1.0E-72
blast CAE68282 Hypothetical protein CBG13966 [Caenorhabditis briggsae] 3.0E-70
blast CAE68282 Hypothetical protein CBG13966 [Caenorhabditis briggsae] 3.0E-56
blast AAI00558 Inner mitochondrial membrane peptidase 2-like [Mus musculus] ref|NP_444352.2| inner mitochondrial membrane peptidase 2-like [Mus musculus] dbj|BAC35362.1| unnamed protein product [Mus musculus] 1.0E-27
blast AAI00558 Inner mitochondrial membrane peptidase 2-like [Mus musculus] ref|NP_444352.2| inner mitochondrial membrane peptidase 2-like [Mus musculus] dbj|BAC35362.1| unnamed protein product [Mus musculus] 8.0E-17
Sequence
Target Sequence 
>C. ELEGANS:186478_AT
cacgtttttcgacgttgtcggccatcccgcacaggttgttggtaattcaatgcagccgac
acttcaaggcggcgatgctcgttggtataaacgtgatattgtctggttatccacgtggaa
tctctacaaatgctcgccgggaactattttgacatttgtatcgcctcgagacccagacgc
agtgcacataaaacgcgtgaccgccgtcgaaaatgcgattgttcgccctgagaaacgtcc
cgaactgattaccgacatcccaaagggacattattggatggaaggggataatcctgaaca
tcgacacgatagcaatgtttatggacctgtaagcacatcactagtcaaaggacgtgccac
gcacattatttggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGTTTTTCGACGTTGTCGGCCAT 677 197 66 Antisense
CCATCCCGCACAGGTTGTTGGTAAT 667 271 87 Antisense
GGTAATTCAATGCAGCCGACACTTC 455 503 106 Antisense
CGACACTTCAAGGCGGCGATGCTCG 243 251 122 Antisense
GTGGAATCTCTACAAATGCTCGCCG 395 491 180 Antisense
TGCTCGCCGGGAACTATTTTGACAT 656 581 196 Antisense
TTTGACATTTGTATCGCCTCGAGAC 689 667 213 Antisense
GAGACCCAGACGCAGTGCACATAAA 163 395 233 Antisense
ACATAAAACGCGTGACCGCCGTCGA 354 1 251 Antisense
GAGAAACGTCCCGAACTGATTACCG 471 387 295 Antisense
GACGTGCCACGCACATTATTTGGCC 415 377 416 Antisense
Sequence Source Affymetrix Proprietary Database